Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-43]:
1dfup_PU0_1-43
CI=2.50


[44-59]:
1dfup_PU0_44-59
CI=0.23


[60-94 ]:
1dfup_PU0_60-94
CI=3.19


Level 1
PU
Molecule needs Java 1.4 Structure


[1-23]:
1dfup_PU1_1-23
CI=0.31


[24-43]:
1dfup_PU1_24-43
CI=2.46


[44-59]:
1dfup_PU1_44-59
CI=0.23


[60-94 ]:
1dfup_PU1_60-94
CI=3.19


Final level 2

PU
Molecule needs Java 1.4 Structure


[1-23]:
1dfup_PU_1-23
CI=0.31


[24-43]:
1dfup_PU_24-43
CI=2.46


[44-59]:
1dfup_PU_44-59
CI=0.23


[60-78]:
1dfup_PU_60-78
CI=1.77


[79-94 ]:
1dfup_PU_79-94
CI=0.70