Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-146]:
1doza_PU0_1-146
CI=3.59


[147-288]:
1doza_PU0_147-288
CI=3.18


[289-309 ]:
1doza_PU0_289-309
CI=0.18


Level 1
PU
Molecule needs Java 1.4 Structure


[1-16]:
1doza_PU1_1-16
CI=0.00


[17-52]:
1doza_PU1_17-52
CI=0.94


[53-146]:
1doza_PU1_53-146
CI=2.55


[147-288]:
1doza_PU1_147-288
CI=3.18


[289-309 ]:
1doza_PU1_289-309
CI=0.18


Level 2
PU
Molecule needs Java 1.4 Structure


[1-16]:
1doza_PU2_1-16
CI=0.00


[17-52]:
1doza_PU2_17-52
CI=0.94


[53-84]:
1doza_PU2_53-84
CI=1.00


[85-146]:
1doza_PU2_85-146
CI=2.83


[147-288]:
1doza_PU2_147-288
CI=3.18


[289-309 ]:
1doza_PU2_289-309
CI=0.18


Level 3
PU
Molecule needs Java 1.4 Structure


[1-16]:
1doza_PU3_1-16
CI=0.00


[17-34]:
1doza_PU3_17-34
CI=1.01


[35-52]:
1doza_PU3_35-52
CI=0.10


[53-84]:
1doza_PU3_53-84
CI=1.00


[85-146]:
1doza_PU3_85-146
CI=2.83


[147-288]:
1doza_PU3_147-288
CI=3.18


[289-309 ]:
1doza_PU3_289-309
CI=0.18


Level 4
PU
Molecule needs Java 1.4 Structure


[1-16]:
1doza_PU4_1-16
CI=0.00


[17-34]:
1doza_PU4_17-34
CI=1.01


[35-52]:
1doza_PU4_35-52
CI=0.10


[53-84]:
1doza_PU4_53-84
CI=1.00


[85-146]:
1doza_PU4_85-146
CI=2.83


[147-233]:
1doza_PU4_147-233
CI=2.31


[234-288]:
1doza_PU4_234-288
CI=1.97


[289-309 ]:
1doza_PU4_289-309
CI=0.18


Level 5
PU
Molecule needs Java 1.4 Structure


[1-16]:
1doza_PU5_1-16
CI=0.00


[17-34]:
1doza_PU5_17-34
CI=1.01


[35-52]:
1doza_PU5_35-52
CI=0.10


[53-84]:
1doza_PU5_53-84
CI=1.00


[85-146]:
1doza_PU5_85-146
CI=2.83


[147-173]:
1doza_PU5_147-173
CI=0.14


[174-233]:
1doza_PU5_174-233
CI=2.44


[234-288]:
1doza_PU5_234-288
CI=1.97


[289-309 ]:
1doza_PU5_289-309
CI=0.18


Level 6
PU
Molecule needs Java 1.4 Structure


[1-16]:
1doza_PU6_1-16
CI=0.00


[17-34]:
1doza_PU6_17-34
CI=1.01


[35-52]:
1doza_PU6_35-52
CI=0.10


[53-84]:
1doza_PU6_53-84
CI=1.00


[85-146]:
1doza_PU6_85-146
CI=2.83


[147-173]:
1doza_PU6_147-173
CI=0.14


[174-192]:
1doza_PU6_174-192
CI=0.00


[193-213]:
1doza_PU6_193-213
CI=0.09


[214-233]:
1doza_PU6_214-233
CI=1.22


[234-288]:
1doza_PU6_234-288
CI=1.97


[289-309 ]:
1doza_PU6_289-309
CI=0.18


Level 7
PU
Molecule needs Java 1.4 Structure


[1-16]:
1doza_PU7_1-16
CI=0.00


[17-34]:
1doza_PU7_17-34
CI=1.01


[35-52]:
1doza_PU7_35-52
CI=0.10


[53-84]:
1doza_PU7_53-84
CI=1.00


[85-104]:
1doza_PU7_85-104
CI=0.37


[105-146]:
1doza_PU7_105-146
CI=2.96


[147-173]:
1doza_PU7_147-173
CI=0.14


[174-192]:
1doza_PU7_174-192
CI=0.00


[193-213]:
1doza_PU7_193-213
CI=0.09


[214-233]:
1doza_PU7_214-233
CI=1.22


[234-288]:
1doza_PU7_234-288
CI=1.97


[289-309 ]:
1doza_PU7_289-309
CI=0.18


Level 8
PU
Molecule needs Java 1.4 Structure


[1-16]:
1doza_PU8_1-16
CI=0.00


[17-34]:
1doza_PU8_17-34
CI=1.01


[35-52]:
1doza_PU8_35-52
CI=0.10


[53-84]:
1doza_PU8_53-84
CI=1.00


[85-104]:
1doza_PU8_85-104
CI=0.37


[105-146]:
1doza_PU8_105-146
CI=2.96


[147-173]:
1doza_PU8_147-173
CI=0.14


[174-192]:
1doza_PU8_174-192
CI=0.00


[193-213]:
1doza_PU8_193-213
CI=0.09


[214-233]:
1doza_PU8_214-233
CI=1.22


[234-252]:
1doza_PU8_234-252
CI=0.28


[253-288]:
1doza_PU8_253-288
CI=1.19


[289-309 ]:
1doza_PU8_289-309
CI=0.18


Final level 9

PU
Molecule needs Java 1.4 Structure


[1-16]:
1doza_PU_1-16
CI=0.00


[17-34]:
1doza_PU_17-34
CI=1.01


[35-52]:
1doza_PU_35-52
CI=0.10


[53-84]:
1doza_PU_53-84
CI=1.00


[85-104]:
1doza_PU_85-104
CI=0.37


[105-146]:
1doza_PU_105-146
CI=2.96


[147-173]:
1doza_PU_147-173
CI=0.14


[174-192]:
1doza_PU_174-192
CI=0.00


[193-213]:
1doza_PU_193-213
CI=0.09


[214-233]:
1doza_PU_214-233
CI=1.22


[234-252]:
1doza_PU_234-252
CI=0.28


[253-269]:
1doza_PU_253-269
CI=0.53


[270-288]:
1doza_PU_270-288
CI=0.49


[289-309 ]:
1doza_PU_289-309
CI=0.18