Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-180]:
1dqsa_PU0_1-180
CI=4.29


[181-381 ]:
1dqsa_PU0_181-381
CI=3.05


Level 1
PU
Molecule needs Java 1.4 Structure


[1-180]:
1dqsa_PU1_1-180
CI=4.29


[181-201]:
1dqsa_PU1_181-201
CI=0.00


[202-249]:
1dqsa_PU1_202-249
CI=0.42


[250-381 ]:
1dqsa_PU1_250-381
CI=3.13


Level 2
PU
Molecule needs Java 1.4 Structure


[1-180]:
1dqsa_PU2_1-180
CI=4.29


[181-201]:
1dqsa_PU2_181-201
CI=0.00


[202-233]:
1dqsa_PU2_202-233
CI=0.57


[234-249]:
1dqsa_PU2_234-249
CI=0.00


[250-381 ]:
1dqsa_PU2_250-381
CI=3.13


Level 3
PU
Molecule needs Java 1.4 Structure


[1-16]:
1dqsa_PU3_1-16
CI=2.20


[17-75]:
1dqsa_PU3_17-75
CI=2.06


[76-180]:
1dqsa_PU3_76-180
CI=4.15


[181-201]:
1dqsa_PU3_181-201
CI=0.00


[202-233]:
1dqsa_PU3_202-233
CI=0.57


[234-249]:
1dqsa_PU3_234-249
CI=0.00


[250-381 ]:
1dqsa_PU3_250-381
CI=3.13


Level 4
PU
Molecule needs Java 1.4 Structure


[1-16]:
1dqsa_PU4_1-16
CI=2.20


[17-75]:
1dqsa_PU4_17-75
CI=2.06


[76-180]:
1dqsa_PU4_76-180
CI=4.15


[181-201]:
1dqsa_PU4_181-201
CI=0.00


[202-233]:
1dqsa_PU4_202-233
CI=0.57


[234-249]:
1dqsa_PU4_234-249
CI=0.00


[250-303]:
1dqsa_PU4_250-303
CI=2.16


[304-332]:
1dqsa_PU4_304-332
CI=0.45


[333-381 ]:
1dqsa_PU4_333-381
CI=1.78


Level 5
PU
Molecule needs Java 1.4 Structure


[1-16]:
1dqsa_PU5_1-16
CI=2.20


[17-75]:
1dqsa_PU5_17-75
CI=2.06


[76-180]:
1dqsa_PU5_76-180
CI=4.15


[181-201]:
1dqsa_PU5_181-201
CI=0.00


[202-233]:
1dqsa_PU5_202-233
CI=0.57


[234-249]:
1dqsa_PU5_234-249
CI=0.00


[250-285]:
1dqsa_PU5_250-285
CI=2.06


[286-303]:
1dqsa_PU5_286-303
CI=1.52


[304-332]:
1dqsa_PU5_304-332
CI=0.45


[333-381 ]:
1dqsa_PU5_333-381
CI=1.78


Level 6
PU
Molecule needs Java 1.4 Structure


[1-16]:
1dqsa_PU6_1-16
CI=2.20


[17-75]:
1dqsa_PU6_17-75
CI=2.06


[76-180]:
1dqsa_PU6_76-180
CI=4.15


[181-201]:
1dqsa_PU6_181-201
CI=0.00


[202-233]:
1dqsa_PU6_202-233
CI=0.57


[234-249]:
1dqsa_PU6_234-249
CI=0.00


[250-285]:
1dqsa_PU6_250-285
CI=2.06


[286-303]:
1dqsa_PU6_286-303
CI=1.52


[304-332]:
1dqsa_PU6_304-332
CI=0.45


[333-353]:
1dqsa_PU6_333-353
CI=0.52


[354-381 ]:
1dqsa_PU6_354-381
CI=1.42


Level 7
PU
Molecule needs Java 1.4 Structure


[1-16]:
1dqsa_PU7_1-16
CI=2.20


[17-33]:
1dqsa_PU7_17-33
CI=0.00


[34-75]:
1dqsa_PU7_34-75
CI=2.10


[76-180]:
1dqsa_PU7_76-180
CI=4.15


[181-201]:
1dqsa_PU7_181-201
CI=0.00


[202-233]:
1dqsa_PU7_202-233
CI=0.57


[234-249]:
1dqsa_PU7_234-249
CI=0.00


[250-285]:
1dqsa_PU7_250-285
CI=2.06


[286-303]:
1dqsa_PU7_286-303
CI=1.52


[304-332]:
1dqsa_PU7_304-332
CI=0.45


[333-353]:
1dqsa_PU7_333-353
CI=0.52


[354-381 ]:
1dqsa_PU7_354-381
CI=1.42


Final level 8

PU
Molecule needs Java 1.4 Structure


[1-16]:
1dqsa_PU_1-16
CI=2.20


[17-33]:
1dqsa_PU_17-33
CI=0.00


[34-75]:
1dqsa_PU_34-75
CI=2.10


[76-101]:
1dqsa_PU_76-101
CI=0.50


[102-180]:
1dqsa_PU_102-180
CI=4.60


[181-201]:
1dqsa_PU_181-201
CI=0.00


[202-233]:
1dqsa_PU_202-233
CI=0.57


[234-249]:
1dqsa_PU_234-249
CI=0.00


[250-285]:
1dqsa_PU_250-285
CI=2.06


[286-303]:
1dqsa_PU_286-303
CI=1.52


[304-332]:
1dqsa_PU_304-332
CI=0.45


[333-353]:
1dqsa_PU_333-353
CI=0.52


[354-381 ]:
1dqsa_PU_354-381
CI=1.42