Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-107]:
1dz3a_PU0_1-107
CI=3.87


[108-123 ]:
1dz3a_PU0_108-123
CI=0.00


Level 1
PU
Molecule needs Java 1.4 Structure


[1-53]:
1dz3a_PU1_1-53
CI=3.52


[54-107]:
1dz3a_PU1_54-107
CI=2.33


[108-123 ]:
1dz3a_PU1_108-123
CI=0.00


Level 2
PU
Molecule needs Java 1.4 Structure


[1-53]:
1dz3a_PU2_1-53
CI=3.52


[54-76]:
1dz3a_PU2_54-76
CI=0.73


[77-107]:
1dz3a_PU2_77-107
CI=2.13


[108-123 ]:
1dz3a_PU2_108-123
CI=0.00


Final level 3

PU
Molecule needs Java 1.4 Structure


[1-32]:
1dz3a_PU_1-32
CI=2.39


[33-53]:
1dz3a_PU_33-53
CI=0.18


[54-76]:
1dz3a_PU_54-76
CI=0.73


[77-107]:
1dz3a_PU_77-107
CI=2.13


[108-123 ]:
1dz3a_PU_108-123
CI=0.00