Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-27]:
1e6ia_PU0_1-27
CI=0.21


[28-43]:
1e6ia_PU0_28-43
CI=0.46


[44-110 ]:
1e6ia_PU0_44-110
CI=1.52


Level 1
PU
Molecule needs Java 1.4 Structure


[1-27]:
1e6ia_PU1_1-27
CI=0.21


[28-43]:
1e6ia_PU1_28-43
CI=0.46


[44-94]:
1e6ia_PU1_44-94
CI=1.50


[95-110 ]:
1e6ia_PU1_95-110
CI=0.92


Final level 2

PU
Molecule needs Java 1.4 Structure


[1-27]:
1e6ia_PU_1-27
CI=0.21


[28-43]:
1e6ia_PU_28-43
CI=0.46


[44-71]:
1e6ia_PU_44-71
CI=1.21


[72-94]:
1e6ia_PU_72-94
CI=1.24


[95-110 ]:
1e6ia_PU_95-110
CI=0.92