Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-38]:
1e87a_PU0_1-38
CI=1.34


[39-104]:
1e87a_PU0_39-104
CI=3.86


[105-117 ]:
1e87a_PU0_105-117
CI=0.00


Level 1
PU
Molecule needs Java 1.4 Structure


[1-17]:
1e87a_PU1_1-17
CI=1.53


[18-38]:
1e87a_PU1_18-38
CI=0.96


[39-104]:
1e87a_PU1_39-104
CI=3.86


[105-117 ]:
1e87a_PU1_105-117
CI=0.00


Level 2
PU
Molecule needs Java 1.4 Structure


[1-17]:
1e87a_PU2_1-17
CI=1.53


[18-38]:
1e87a_PU2_18-38
CI=0.96


[39-55]:
1e87a_PU2_39-55
CI=0.21


[56-104]:
1e87a_PU2_56-104
CI=3.69


[105-117 ]:
1e87a_PU2_105-117
CI=0.00


Final level 3

PU
Molecule needs Java 1.4 Structure


[1-17]:
1e87a_PU_1-17
CI=1.53


[18-38]:
1e87a_PU_18-38
CI=0.96


[39-55]:
1e87a_PU_39-55
CI=0.21


[56-83]:
1e87a_PU_56-83
CI=1.48


[84-104]:
1e87a_PU_84-104
CI=3.30


[105-117 ]:
1e87a_PU_105-117
CI=0.00