Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-23]:
1eaqa_PU0_1-23
CI=1.08


[24-121 ]:
1eaqa_PU0_24-121
CI=5.22


Level 1
PU
Molecule needs Java 1.4 Structure


[1-23]:
1eaqa_PU1_1-23
CI=1.08


[24-39]:
1eaqa_PU1_24-39
CI=0.80


[40-82]:
1eaqa_PU1_40-82
CI=3.46


[83-121 ]:
1eaqa_PU1_83-121
CI=2.65


Level 2
PU
Molecule needs Java 1.4 Structure


[1-23]:
1eaqa_PU2_1-23
CI=1.08


[24-39]:
1eaqa_PU2_24-39
CI=0.80


[40-65]:
1eaqa_PU2_40-65
CI=0.58


[66-82]:
1eaqa_PU2_66-82
CI=2.06


[83-121 ]:
1eaqa_PU2_83-121
CI=2.65


Final level 3

PU
Molecule needs Java 1.4 Structure


[1-23]:
1eaqa_PU_1-23
CI=1.08


[24-39]:
1eaqa_PU_24-39
CI=0.80


[40-65]:
1eaqa_PU_40-65
CI=0.58


[66-82]:
1eaqa_PU_66-82
CI=2.06


[83-105]:
1eaqa_PU_83-105
CI=0.24


[106-121 ]:
1eaqa_PU_106-121
CI=0.00