Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-36]:
1eayc_PU0_1-36
CI=2.64


[37-108]:
1eayc_PU0_37-108
CI=3.40


[109-128 ]:
1eayc_PU0_109-128
CI=0.27


Level 1
PU
Molecule needs Java 1.4 Structure


[1-36]:
1eayc_PU1_1-36
CI=2.64


[37-80]:
1eayc_PU1_37-80
CI=1.86


[81-108]:
1eayc_PU1_81-108
CI=2.37


[109-128 ]:
1eayc_PU1_109-128
CI=0.27


Level 2
PU
Molecule needs Java 1.4 Structure


[1-36]:
1eayc_PU2_1-36
CI=2.64


[37-64]:
1eayc_PU2_37-64
CI=1.41


[65-80]:
1eayc_PU2_65-80
CI=1.37


[81-108]:
1eayc_PU2_81-108
CI=2.37


[109-128 ]:
1eayc_PU2_109-128
CI=0.27


Final level 3

PU
Molecule needs Java 1.4 Structure


[1-17]:
1eayc_PU_1-17
CI=0.33


[18-36]:
1eayc_PU_18-36
CI=0.57


[37-64]:
1eayc_PU_37-64
CI=1.41


[65-80]:
1eayc_PU_65-80
CI=1.37


[81-108]:
1eayc_PU_81-108
CI=2.37


[109-128 ]:
1eayc_PU_109-128
CI=0.27