Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-52]:
1ecsa_PU0_1-52
CI=3.58


[53-120 ]:
1ecsa_PU0_53-120
CI=3.89


Level 1
PU
Molecule needs Java 1.4 Structure


[1-52]:
1ecsa_PU1_1-52
CI=3.58


[53-68]:
1ecsa_PU1_53-68
CI=0.00


[69-94]:
1ecsa_PU1_69-94
CI=1.59


[95-120 ]:
1ecsa_PU1_95-120
CI=2.33


Final level 2

PU
Molecule needs Java 1.4 Structure


[1-24]:
1ecsa_PU_1-24
CI=0.08


[25-52]:
1ecsa_PU_25-52
CI=2.78


[53-68]:
1ecsa_PU_53-68
CI=0.00


[69-94]:
1ecsa_PU_69-94
CI=1.59


[95-120 ]:
1ecsa_PU_95-120
CI=2.33