Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-29]:
1euwa_PU0_1-29
CI=0.13


[30-127]:
1euwa_PU0_30-127
CI=5.11


[128-136 ]:
1euwa_PU0_128-136
CI=0.00


Level 1
PU
Molecule needs Java 1.4 Structure


[1-29]:
1euwa_PU1_1-29
CI=0.13


[30-56]:
1euwa_PU1_30-56
CI=0.90


[57-94]:
1euwa_PU1_57-94
CI=2.56


[95-127]:
1euwa_PU1_95-127
CI=0.11


[128-136 ]:
1euwa_PU1_128-136
CI=0.00


Level 2
PU
Molecule needs Java 1.4 Structure


[1-29]:
1euwa_PU2_1-29
CI=0.13


[30-56]:
1euwa_PU2_30-56
CI=0.90


[57-94]:
1euwa_PU2_57-94
CI=2.56


[95-111]:
1euwa_PU2_95-111
CI=0.00


[112-127]:
1euwa_PU2_112-127
CI=0.00


[128-136 ]:
1euwa_PU2_128-136
CI=0.00


Final level 3

PU
Molecule needs Java 1.4 Structure


[1-29]:
1euwa_PU_1-29
CI=0.13


[30-56]:
1euwa_PU_30-56
CI=0.90


[57-78]:
1euwa_PU_57-78
CI=0.17


[79-94]:
1euwa_PU_79-94
CI=0.00


[95-111]:
1euwa_PU_95-111
CI=0.00


[112-127]:
1euwa_PU_112-127
CI=0.00


[128-136 ]:
1euwa_PU_128-136
CI=0.00