Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-44]:
1ezga_PU0_1-44
CI=7.29


[45-82 ]:
1ezga_PU0_45-82
CI=6.76


Level 1
PU
Molecule needs Java 1.4 Structure


[1-24]:
1ezga_PU1_1-24
CI=4.79


[25-44]:
1ezga_PU1_25-44
CI=4.42


[45-82 ]:
1ezga_PU1_45-82
CI=6.76


Final level 2

PU
Molecule needs Java 1.4 Structure


[1-24]:
1ezga_PU_1-24
CI=4.79


[25-44]:
1ezga_PU_25-44
CI=4.42


[45-63]:
1ezga_PU_45-63
CI=4.12


[64-82 ]:
1ezga_PU_64-82
CI=3.72