Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-16]:
1f46a_PU0_1-16
CI=0.00


[17-74]:
1f46a_PU0_17-74
CI=2.96


[75-139 ]:
1f46a_PU0_75-139
CI=1.05


Level 1
PU
Molecule needs Java 1.4 Structure


[1-16]:
1f46a_PU1_1-16
CI=0.00


[17-74]:
1f46a_PU1_17-74
CI=2.96


[75-119]:
1f46a_PU1_75-119
CI=0.93


[120-139 ]:
1f46a_PU1_120-139
CI=0.00


Level 2
PU
Molecule needs Java 1.4 Structure


[1-16]:
1f46a_PU2_1-16
CI=0.00


[17-74]:
1f46a_PU2_17-74
CI=2.96


[75-96]:
1f46a_PU2_75-96
CI=0.51


[97-119]:
1f46a_PU2_97-119
CI=0.98


[120-139 ]:
1f46a_PU2_120-139
CI=0.00


Level 3
PU
Molecule needs Java 1.4 Structure


[1-16]:
1f46a_PU3_1-16
CI=0.00


[17-57]:
1f46a_PU3_17-57
CI=2.42


[58-74]:
1f46a_PU3_58-74
CI=0.54


[75-96]:
1f46a_PU3_75-96
CI=0.51


[97-119]:
1f46a_PU3_97-119
CI=0.98


[120-139 ]:
1f46a_PU3_120-139
CI=0.00


Final level 4

PU
Molecule needs Java 1.4 Structure


[1-16]:
1f46a_PU_1-16
CI=0.00


[17-33]:
1f46a_PU_17-33
CI=0.11


[34-57]:
1f46a_PU_34-57
CI=2.38


[58-74]:
1f46a_PU_58-74
CI=0.54


[75-96]:
1f46a_PU_75-96
CI=0.51


[97-119]:
1f46a_PU_97-119
CI=0.98


[120-139 ]:
1f46a_PU_120-139
CI=0.00