Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-40]:
1f4pa_PU0_1-40
CI=2.66


[41-126]:
1f4pa_PU0_41-126
CI=4.39


[127-147 ]:
1f4pa_PU0_127-147
CI=0.08


Level 1
PU
Molecule needs Java 1.4 Structure


[1-40]:
1f4pa_PU1_1-40
CI=2.66


[41-56]:
1f4pa_PU1_41-56
CI=0.12


[57-75]:
1f4pa_PU1_57-75
CI=1.27


[76-126]:
1f4pa_PU1_76-126
CI=3.38


[127-147 ]:
1f4pa_PU1_127-147
CI=0.08


Level 2
PU
Molecule needs Java 1.4 Structure


[1-21]:
1f4pa_PU2_1-21
CI=0.89


[22-40]:
1f4pa_PU2_22-40
CI=0.58


[41-56]:
1f4pa_PU2_41-56
CI=0.12


[57-75]:
1f4pa_PU2_57-75
CI=1.27


[76-126]:
1f4pa_PU2_76-126
CI=3.38


[127-147 ]:
1f4pa_PU2_127-147
CI=0.08


Level 3
PU
Molecule needs Java 1.4 Structure


[1-21]:
1f4pa_PU3_1-21
CI=0.89


[22-40]:
1f4pa_PU3_22-40
CI=0.58


[41-56]:
1f4pa_PU3_41-56
CI=0.12


[57-75]:
1f4pa_PU3_57-75
CI=1.27


[76-92]:
1f4pa_PU3_76-92
CI=0.00


[93-126]:
1f4pa_PU3_93-126
CI=1.39


[127-147 ]:
1f4pa_PU3_127-147
CI=0.08


Final level 4

PU
Molecule needs Java 1.4 Structure


[1-21]:
1f4pa_PU_1-21
CI=0.89


[22-40]:
1f4pa_PU_22-40
CI=0.58


[41-56]:
1f4pa_PU_41-56
CI=0.12


[57-75]:
1f4pa_PU_57-75
CI=1.27


[76-92]:
1f4pa_PU_76-92
CI=0.00


[93-109]:
1f4pa_PU_93-109
CI=0.75


[110-126]:
1f4pa_PU_110-126
CI=0.31


[127-147 ]:
1f4pa_PU_127-147
CI=0.08