Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-16]:
1f94a_PU0_1-16
CI=2.55


[17-55]:
1f94a_PU0_17-55
CI=4.42


[56-63 ]:
1f94a_PU0_56-63
CI=0.22


Final level 1

PU
Molecule needs Java 1.4 Structure


[1-16]:
1f94a_PU_1-16
CI=2.55


[17-39]:
1f94a_PU_17-39
CI=2.45


[40-55]:
1f94a_PU_40-55
CI=1.50


[56-63 ]:
1f94a_PU_56-63
CI=0.22