Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-63]:
1f9va_PU0_1-63
CI=3.10


[64-282]:
1f9va_PU0_64-282
CI=3.88


[283-313 ]:
1f9va_PU0_283-313
CI=0.36


Level 1
PU
Molecule needs Java 1.4 Structure


[1-63]:
1f9va_PU1_1-63
CI=3.10


[64-221]:
1f9va_PU1_64-221
CI=4.22


[222-272]:
1f9va_PU1_222-272
CI=1.16


[273-282]:
1f9va_PU1_273-282
CI=0.35


[283-313 ]:
1f9va_PU1_283-313
CI=0.36


Level 2
PU
Molecule needs Java 1.4 Structure


[1-63]:
1f9va_PU2_1-63
CI=3.10


[64-221]:
1f9va_PU2_64-221
CI=4.22


[222-240]:
1f9va_PU2_222-240
CI=0.39


[241-272]:
1f9va_PU2_241-272
CI=1.58


[273-282]:
1f9va_PU2_273-282
CI=0.35


[283-313 ]:
1f9va_PU2_283-313
CI=0.36


Level 3
PU
Molecule needs Java 1.4 Structure


[1-63]:
1f9va_PU3_1-63
CI=3.10


[64-148]:
1f9va_PU3_64-148
CI=1.75


[149-165]:
1f9va_PU3_149-165
CI=2.51


[166-221]:
1f9va_PU3_166-221
CI=1.96


[222-240]:
1f9va_PU3_222-240
CI=0.39


[241-272]:
1f9va_PU3_241-272
CI=1.58


[273-282]:
1f9va_PU3_273-282
CI=0.35


[283-313 ]:
1f9va_PU3_283-313
CI=0.36


Level 4
PU
Molecule needs Java 1.4 Structure


[1-63]:
1f9va_PU4_1-63
CI=3.10


[64-132]:
1f9va_PU4_64-132
CI=1.73


[133-148]:
1f9va_PU4_133-148
CI=1.72


[149-165]:
1f9va_PU4_149-165
CI=2.51


[166-221]:
1f9va_PU4_166-221
CI=1.96


[222-240]:
1f9va_PU4_222-240
CI=0.39


[241-272]:
1f9va_PU4_241-272
CI=1.58


[273-282]:
1f9va_PU4_273-282
CI=0.35


[283-313 ]:
1f9va_PU4_283-313
CI=0.36


Level 5
PU
Molecule needs Java 1.4 Structure


[1-63]:
1f9va_PU5_1-63
CI=3.10


[64-132]:
1f9va_PU5_64-132
CI=1.73


[133-148]:
1f9va_PU5_133-148
CI=1.72


[149-165]:
1f9va_PU5_149-165
CI=2.51


[166-185]:
1f9va_PU5_166-185
CI=0.27


[186-221]:
1f9va_PU5_186-221
CI=2.87


[222-240]:
1f9va_PU5_222-240
CI=0.39


[241-272]:
1f9va_PU5_241-272
CI=1.58


[273-282]:
1f9va_PU5_273-282
CI=0.35


[283-313 ]:
1f9va_PU5_283-313
CI=0.36


Level 6
PU
Molecule needs Java 1.4 Structure


[1-63]:
1f9va_PU6_1-63
CI=3.10


[64-115]:
1f9va_PU6_64-115
CI=1.90


[116-132]:
1f9va_PU6_116-132
CI=0.73


[133-148]:
1f9va_PU6_133-148
CI=1.72


[149-165]:
1f9va_PU6_149-165
CI=2.51


[166-185]:
1f9va_PU6_166-185
CI=0.27


[186-221]:
1f9va_PU6_186-221
CI=2.87


[222-240]:
1f9va_PU6_222-240
CI=0.39


[241-272]:
1f9va_PU6_241-272
CI=1.58


[273-282]:
1f9va_PU6_273-282
CI=0.35


[283-313 ]:
1f9va_PU6_283-313
CI=0.36


Level 7
PU
Molecule needs Java 1.4 Structure


[1-18]:
1f9va_PU7_1-18
CI=0.10


[19-53]:
1f9va_PU7_19-53
CI=2.84


[54-63]:
1f9va_PU7_54-63
CI=0.00


[64-115]:
1f9va_PU7_64-115
CI=1.90


[116-132]:
1f9va_PU7_116-132
CI=0.73


[133-148]:
1f9va_PU7_133-148
CI=1.72


[149-165]:
1f9va_PU7_149-165
CI=2.51


[166-185]:
1f9va_PU7_166-185
CI=0.27


[186-221]:
1f9va_PU7_186-221
CI=2.87


[222-240]:
1f9va_PU7_222-240
CI=0.39


[241-272]:
1f9va_PU7_241-272
CI=1.58


[273-282]:
1f9va_PU7_273-282
CI=0.35


[283-313 ]:
1f9va_PU7_283-313
CI=0.36


Level 8
PU
Molecule needs Java 1.4 Structure


[1-18]:
1f9va_PU8_1-18
CI=0.10


[19-53]:
1f9va_PU8_19-53
CI=2.84


[54-63]:
1f9va_PU8_54-63
CI=0.00


[64-88]:
1f9va_PU8_64-88
CI=0.59


[89-115]:
1f9va_PU8_89-115
CI=1.05


[116-132]:
1f9va_PU8_116-132
CI=0.73


[133-148]:
1f9va_PU8_133-148
CI=1.72


[149-165]:
1f9va_PU8_149-165
CI=2.51


[166-185]:
1f9va_PU8_166-185
CI=0.27


[186-221]:
1f9va_PU8_186-221
CI=2.87


[222-240]:
1f9va_PU8_222-240
CI=0.39


[241-272]:
1f9va_PU8_241-272
CI=1.58


[273-282]:
1f9va_PU8_273-282
CI=0.35


[283-313 ]:
1f9va_PU8_283-313
CI=0.36


Final level 9

PU
Molecule needs Java 1.4 Structure


[1-18]:
1f9va_PU_1-18
CI=0.10


[19-53]:
1f9va_PU_19-53
CI=2.84


[54-63]:
1f9va_PU_54-63
CI=0.00


[64-88]:
1f9va_PU_64-88
CI=0.59


[89-115]:
1f9va_PU_89-115
CI=1.05


[116-132]:
1f9va_PU_116-132
CI=0.73


[133-148]:
1f9va_PU_133-148
CI=1.72


[149-165]:
1f9va_PU_149-165
CI=2.51


[166-185]:
1f9va_PU_166-185
CI=0.27


[186-202]:
1f9va_PU_186-202
CI=0.00


[203-221]:
1f9va_PU_203-221
CI=0.00


[222-240]:
1f9va_PU_222-240
CI=0.39


[241-272]:
1f9va_PU_241-272
CI=1.58


[273-282]:
1f9va_PU_273-282
CI=0.35


[283-313 ]:
1f9va_PU_283-313
CI=0.36