Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-76]:
1fc3a_PU0_1-76
CI=1.83


[77-99]:
1fc3a_PU0_77-99
CI=1.21


[100-119 ]:
1fc3a_PU0_100-119
CI=0.09


Level 1
PU
Molecule needs Java 1.4 Structure


[1-30]:
1fc3a_PU1_1-30
CI=0.87


[31-66]:
1fc3a_PU1_31-66
CI=1.30


[67-76]:
1fc3a_PU1_67-76
CI=0.00


[77-99]:
1fc3a_PU1_77-99
CI=1.21


[100-119 ]:
1fc3a_PU1_100-119
CI=0.09


Final level 2

PU
Molecule needs Java 1.4 Structure


[1-30]:
1fc3a_PU_1-30
CI=0.87


[31-47]:
1fc3a_PU_31-47
CI=0.22


[48-66]:
1fc3a_PU_48-66
CI=1.46


[67-76]:
1fc3a_PU_67-76
CI=0.00


[77-99]:
1fc3a_PU_77-99
CI=1.21


[100-119 ]:
1fc3a_PU_100-119
CI=0.09