Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-41]:
1foba_PU0_1-41
CI=1.07


[42-212]:
1foba_PU0_42-212
CI=4.49


[213-334 ]:
1foba_PU0_213-334
CI=3.73


Level 1
PU
Molecule needs Java 1.4 Structure


[1-20]:
1foba_PU1_1-20
CI=0.00


[21-41]:
1foba_PU1_21-41
CI=1.43


[42-212]:
1foba_PU1_42-212
CI=4.49


[213-334 ]:
1foba_PU1_213-334
CI=3.73


Level 2
PU
Molecule needs Java 1.4 Structure


[1-20]:
1foba_PU2_1-20
CI=0.00


[21-41]:
1foba_PU2_21-41
CI=1.43


[42-97]:
1foba_PU2_42-97
CI=3.39


[98-212]:
1foba_PU2_98-212
CI=3.74


[213-334 ]:
1foba_PU2_213-334
CI=3.73


Level 3
PU
Molecule needs Java 1.4 Structure


[1-20]:
1foba_PU3_1-20
CI=0.00


[21-41]:
1foba_PU3_21-41
CI=1.43


[42-97]:
1foba_PU3_42-97
CI=3.39


[98-212]:
1foba_PU3_98-212
CI=3.74


[213-297]:
1foba_PU3_213-297
CI=3.16


[298-334 ]:
1foba_PU3_298-334
CI=1.91


Level 4
PU
Molecule needs Java 1.4 Structure


[1-20]:
1foba_PU4_1-20
CI=0.00


[21-41]:
1foba_PU4_21-41
CI=1.43


[42-97]:
1foba_PU4_42-97
CI=3.39


[98-212]:
1foba_PU4_98-212
CI=3.74


[213-297]:
1foba_PU4_213-297
CI=3.16


[298-315]:
1foba_PU4_298-315
CI=1.55


[316-334 ]:
1foba_PU4_316-334
CI=1.28


Level 5
PU
Molecule needs Java 1.4 Structure


[1-20]:
1foba_PU5_1-20
CI=0.00


[21-41]:
1foba_PU5_21-41
CI=1.43


[42-97]:
1foba_PU5_42-97
CI=3.39


[98-212]:
1foba_PU5_98-212
CI=3.74


[213-248]:
1foba_PU5_213-248
CI=1.32


[249-277]:
1foba_PU5_249-277
CI=1.62


[278-297]:
1foba_PU5_278-297
CI=0.83


[298-315]:
1foba_PU5_298-315
CI=1.55


[316-334 ]:
1foba_PU5_316-334
CI=1.28


Level 6
PU
Molecule needs Java 1.4 Structure


[1-20]:
1foba_PU6_1-20
CI=0.00


[21-41]:
1foba_PU6_21-41
CI=1.43


[42-80]:
1foba_PU6_42-80
CI=2.54


[81-97]:
1foba_PU6_81-97
CI=2.05


[98-212]:
1foba_PU6_98-212
CI=3.74


[213-248]:
1foba_PU6_213-248
CI=1.32


[249-277]:
1foba_PU6_249-277
CI=1.62


[278-297]:
1foba_PU6_278-297
CI=0.83


[298-315]:
1foba_PU6_298-315
CI=1.55


[316-334 ]:
1foba_PU6_316-334
CI=1.28


Level 7
PU
Molecule needs Java 1.4 Structure


[1-20]:
1foba_PU7_1-20
CI=0.00


[21-41]:
1foba_PU7_21-41
CI=1.43


[42-80]:
1foba_PU7_42-80
CI=2.54


[81-97]:
1foba_PU7_81-97
CI=2.05


[98-212]:
1foba_PU7_98-212
CI=3.74


[213-230]:
1foba_PU7_213-230
CI=0.50


[231-248]:
1foba_PU7_231-248
CI=0.71


[249-277]:
1foba_PU7_249-277
CI=1.62


[278-297]:
1foba_PU7_278-297
CI=0.83


[298-315]:
1foba_PU7_298-315
CI=1.55


[316-334 ]:
1foba_PU7_316-334
CI=1.28


Level 8
PU
Molecule needs Java 1.4 Structure


[1-20]:
1foba_PU8_1-20
CI=0.00


[21-41]:
1foba_PU8_21-41
CI=1.43


[42-80]:
1foba_PU8_42-80
CI=2.54


[81-97]:
1foba_PU8_81-97
CI=2.05


[98-127]:
1foba_PU8_98-127
CI=0.38


[128-212]:
1foba_PU8_128-212
CI=3.40


[213-230]:
1foba_PU8_213-230
CI=0.50


[231-248]:
1foba_PU8_231-248
CI=0.71


[249-277]:
1foba_PU8_249-277
CI=1.62


[278-297]:
1foba_PU8_278-297
CI=0.83


[298-315]:
1foba_PU8_298-315
CI=1.55


[316-334 ]:
1foba_PU8_316-334
CI=1.28


Level 9
PU
Molecule needs Java 1.4 Structure


[1-20]:
1foba_PU9_1-20
CI=0.00


[21-41]:
1foba_PU9_21-41
CI=1.43


[42-80]:
1foba_PU9_42-80
CI=2.54


[81-97]:
1foba_PU9_81-97
CI=2.05


[98-127]:
1foba_PU9_98-127
CI=0.38


[128-156]:
1foba_PU9_128-156
CI=0.97


[157-173]:
1foba_PU9_157-173
CI=0.22


[174-212]:
1foba_PU9_174-212
CI=1.67


[213-230]:
1foba_PU9_213-230
CI=0.50


[231-248]:
1foba_PU9_231-248
CI=0.71


[249-277]:
1foba_PU9_249-277
CI=1.62


[278-297]:
1foba_PU9_278-297
CI=0.83


[298-315]:
1foba_PU9_298-315
CI=1.55


[316-334 ]:
1foba_PU9_316-334
CI=1.28


Final level 10

PU
Molecule needs Java 1.4 Structure


[1-20]:
1foba_PU_1-20
CI=0.00


[21-41]:
1foba_PU_21-41
CI=1.43


[42-80]:
1foba_PU_42-80
CI=2.54


[81-97]:
1foba_PU_81-97
CI=2.05


[98-127]:
1foba_PU_98-127
CI=0.38


[128-156]:
1foba_PU_128-156
CI=0.97


[157-173]:
1foba_PU_157-173
CI=0.22


[174-192]:
1foba_PU_174-192
CI=0.47


[193-212]:
1foba_PU_193-212
CI=0.28


[213-230]:
1foba_PU_213-230
CI=0.50


[231-248]:
1foba_PU_231-248
CI=0.71


[249-277]:
1foba_PU_249-277
CI=1.62


[278-297]:
1foba_PU_278-297
CI=0.83


[298-315]:
1foba_PU_298-315
CI=1.55


[316-334 ]:
1foba_PU_316-334
CI=1.28