Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-184]:
1fvia_PU0_1-184
CI=4.43


[185-264 ]:
1fvia_PU0_185-264
CI=4.27


Level 1
PU
Molecule needs Java 1.4 Structure


[1-27]:
1fvia_PU1_1-27
CI=0.00


[28-133]:
1fvia_PU1_28-133
CI=3.55


[134-184]:
1fvia_PU1_134-184
CI=1.80


[185-264 ]:
1fvia_PU1_185-264
CI=4.27


Level 2
PU
Molecule needs Java 1.4 Structure


[1-27]:
1fvia_PU2_1-27
CI=0.00


[28-133]:
1fvia_PU2_28-133
CI=3.55


[134-157]:
1fvia_PU2_134-157
CI=0.62


[158-184]:
1fvia_PU2_158-184
CI=2.02


[185-264 ]:
1fvia_PU2_185-264
CI=4.27


Level 3
PU
Molecule needs Java 1.4 Structure


[1-27]:
1fvia_PU3_1-27
CI=0.00


[28-85]:
1fvia_PU3_28-85
CI=3.22


[86-133]:
1fvia_PU3_86-133
CI=2.07


[134-157]:
1fvia_PU3_134-157
CI=0.62


[158-184]:
1fvia_PU3_158-184
CI=2.02


[185-264 ]:
1fvia_PU3_185-264
CI=4.27


Level 4
PU
Molecule needs Java 1.4 Structure


[1-27]:
1fvia_PU4_1-27
CI=0.00


[28-67]:
1fvia_PU4_28-67
CI=2.96


[68-85]:
1fvia_PU4_68-85
CI=0.41


[86-133]:
1fvia_PU4_86-133
CI=2.07


[134-157]:
1fvia_PU4_134-157
CI=0.62


[158-184]:
1fvia_PU4_158-184
CI=2.02


[185-264 ]:
1fvia_PU4_185-264
CI=4.27


Level 5
PU
Molecule needs Java 1.4 Structure


[1-27]:
1fvia_PU5_1-27
CI=0.00


[28-67]:
1fvia_PU5_28-67
CI=2.96


[68-85]:
1fvia_PU5_68-85
CI=0.41


[86-111]:
1fvia_PU5_86-111
CI=1.00


[112-133]:
1fvia_PU5_112-133
CI=0.75


[134-157]:
1fvia_PU5_134-157
CI=0.62


[158-184]:
1fvia_PU5_158-184
CI=2.02


[185-264 ]:
1fvia_PU5_185-264
CI=4.27


Level 6
PU
Molecule needs Java 1.4 Structure


[1-27]:
1fvia_PU6_1-27
CI=0.00


[28-67]:
1fvia_PU6_28-67
CI=2.96


[68-85]:
1fvia_PU6_68-85
CI=0.41


[86-111]:
1fvia_PU6_86-111
CI=1.00


[112-133]:
1fvia_PU6_112-133
CI=0.75


[134-157]:
1fvia_PU6_134-157
CI=0.62


[158-184]:
1fvia_PU6_158-184
CI=2.02


[185-246]:
1fvia_PU6_185-246
CI=3.21


[247-264 ]:
1fvia_PU6_247-264
CI=2.60


Level 7
PU
Molecule needs Java 1.4 Structure


[1-27]:
1fvia_PU7_1-27
CI=0.00


[28-67]:
1fvia_PU7_28-67
CI=2.96


[68-85]:
1fvia_PU7_68-85
CI=0.41


[86-111]:
1fvia_PU7_86-111
CI=1.00


[112-133]:
1fvia_PU7_112-133
CI=0.75


[134-157]:
1fvia_PU7_134-157
CI=0.62


[158-184]:
1fvia_PU7_158-184
CI=2.02


[185-224]:
1fvia_PU7_185-224
CI=3.12


[225-246]:
1fvia_PU7_225-246
CI=0.08


[247-264 ]:
1fvia_PU7_247-264
CI=2.60


Level 8
PU
Molecule needs Java 1.4 Structure


[1-27]:
1fvia_PU8_1-27
CI=0.00


[28-47]:
1fvia_PU8_28-47
CI=1.77


[48-67]:
1fvia_PU8_48-67
CI=0.00


[68-85]:
1fvia_PU8_68-85
CI=0.41


[86-111]:
1fvia_PU8_86-111
CI=1.00


[112-133]:
1fvia_PU8_112-133
CI=0.75


[134-157]:
1fvia_PU8_134-157
CI=0.62


[158-184]:
1fvia_PU8_158-184
CI=2.02


[185-224]:
1fvia_PU8_185-224
CI=3.12


[225-246]:
1fvia_PU8_225-246
CI=0.08


[247-264 ]:
1fvia_PU8_247-264
CI=2.60


Final level 9

PU
Molecule needs Java 1.4 Structure


[1-27]:
1fvia_PU_1-27
CI=0.00


[28-47]:
1fvia_PU_28-47
CI=1.77


[48-67]:
1fvia_PU_48-67
CI=0.00


[68-85]:
1fvia_PU_68-85
CI=0.41


[86-111]:
1fvia_PU_86-111
CI=1.00


[112-133]:
1fvia_PU_112-133
CI=0.75


[134-157]:
1fvia_PU_134-157
CI=0.62


[158-184]:
1fvia_PU_158-184
CI=2.02


[185-208]:
1fvia_PU_185-208
CI=0.55


[209-224]:
1fvia_PU_209-224
CI=2.09


[225-246]:
1fvia_PU_225-246
CI=0.08


[247-264 ]:
1fvia_PU_247-264
CI=2.60