Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-16]:
1g2ba_PU0_1-16
CI=0.00


[17-49]:
1g2ba_PU0_17-49
CI=3.01


[50-62 ]:
1g2ba_PU0_50-62
CI=0.98


Final level 1

PU
Molecule needs Java 1.4 Structure


[1-16]:
1g2ba_PU_1-16
CI=0.00


[17-33]:
1g2ba_PU_17-33
CI=0.11


[34-49]:
1g2ba_PU_34-49
CI=0.11


[50-62 ]:
1g2ba_PU_50-62
CI=0.98