Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-48]:
1g2ra_PU0_1-48
CI=3.58


[49-94 ]:
1g2ra_PU0_49-94
CI=1.33


Level 1
PU
Molecule needs Java 1.4 Structure


[1-48]:
1g2ra_PU1_1-48
CI=3.58


[49-78]:
1g2ra_PU1_49-78
CI=1.20


[79-94 ]:
1g2ra_PU1_79-94
CI=0.12


Final level 2

PU
Molecule needs Java 1.4 Structure


[1-24]:
1g2ra_PU_1-24
CI=1.26


[25-48]:
1g2ra_PU_25-48
CI=0.79


[49-78]:
1g2ra_PU_49-78
CI=1.20


[79-94 ]:
1g2ra_PU_79-94
CI=0.12