Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-73]:
1ggza_PU0_1-73
CI=1.73


[74-144 ]:
1ggza_PU0_74-144
CI=1.86


Level 1
PU
Molecule needs Java 1.4 Structure


[1-16]:
1ggza_PU1_1-16
CI=0.00


[17-61]:
1ggza_PU1_17-61
CI=1.77


[62-73]:
1ggza_PU1_62-73
CI=0.00


[74-144 ]:
1ggza_PU1_74-144
CI=1.86


Level 2
PU
Molecule needs Java 1.4 Structure


[1-16]:
1ggza_PU2_1-16
CI=0.00


[17-61]:
1ggza_PU2_17-61
CI=1.77


[62-73]:
1ggza_PU2_62-73
CI=0.00


[74-97]:
1ggza_PU2_74-97
CI=0.62


[98-133]:
1ggza_PU2_98-133
CI=1.47


[134-144 ]:
1ggza_PU2_134-144
CI=0.00


Level 3
PU
Molecule needs Java 1.4 Structure


[1-16]:
1ggza_PU3_1-16
CI=0.00


[17-61]:
1ggza_PU3_17-61
CI=1.77


[62-73]:
1ggza_PU3_62-73
CI=0.00


[74-97]:
1ggza_PU3_74-97
CI=0.62


[98-114]:
1ggza_PU3_98-114
CI=0.42


[115-133]:
1ggza_PU3_115-133
CI=0.88


[134-144 ]:
1ggza_PU3_134-144
CI=0.00


Final level 4

PU
Molecule needs Java 1.4 Structure


[1-16]:
1ggza_PU_1-16
CI=0.00


[17-39]:
1ggza_PU_17-39
CI=0.72


[40-61]:
1ggza_PU_40-61
CI=1.00


[62-73]:
1ggza_PU_62-73
CI=0.00


[74-97]:
1ggza_PU_74-97
CI=0.62


[98-114]:
1ggza_PU_98-114
CI=0.42


[115-133]:
1ggza_PU_115-133
CI=0.88


[134-144 ]:
1ggza_PU_134-144
CI=0.00