Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-43]:
1gmxa_PU0_1-43
CI=1.37


[44-59]:
1gmxa_PU0_44-59
CI=0.00


[60-107 ]:
1gmxa_PU0_60-107
CI=2.99


Level 1
PU
Molecule needs Java 1.4 Structure


[1-20]:
1gmxa_PU1_1-20
CI=0.00


[21-43]:
1gmxa_PU1_21-43
CI=2.18


[44-59]:
1gmxa_PU1_44-59
CI=0.00


[60-107 ]:
1gmxa_PU1_60-107
CI=2.99


Final level 2

PU
Molecule needs Java 1.4 Structure


[1-20]:
1gmxa_PU_1-20
CI=0.00


[21-43]:
1gmxa_PU_21-43
CI=2.18


[44-59]:
1gmxa_PU_44-59
CI=0.00


[60-90]:
1gmxa_PU_60-90
CI=3.42


[91-107 ]:
1gmxa_PU_91-107
CI=0.43