Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-19]:
1gp0a_PU0_1-19
CI=2.05


[20-64]:
1gp0a_PU0_20-64
CI=5.63


[65-133 ]:
1gp0a_PU0_65-133
CI=4.61


Level 1
PU
Molecule needs Java 1.4 Structure


[1-19]:
1gp0a_PU1_1-19
CI=2.05


[20-64]:
1gp0a_PU1_20-64
CI=5.63


[65-99]:
1gp0a_PU1_65-99
CI=2.92


[100-133 ]:
1gp0a_PU1_100-133
CI=2.81


Level 2
PU
Molecule needs Java 1.4 Structure


[1-19]:
1gp0a_PU2_1-19
CI=2.05


[20-36]:
1gp0a_PU2_20-36
CI=1.75


[37-64]:
1gp0a_PU2_37-64
CI=4.68


[65-99]:
1gp0a_PU2_65-99
CI=2.92


[100-133 ]:
1gp0a_PU2_100-133
CI=2.81


Level 3
PU
Molecule needs Java 1.4 Structure


[1-19]:
1gp0a_PU3_1-19
CI=2.05


[20-36]:
1gp0a_PU3_20-36
CI=1.75


[37-64]:
1gp0a_PU3_37-64
CI=4.68


[65-81]:
1gp0a_PU3_65-81
CI=0.99


[82-99]:
1gp0a_PU3_82-99
CI=0.94


[100-133 ]:
1gp0a_PU3_100-133
CI=2.81


Final level 4

PU
Molecule needs Java 1.4 Structure


[1-19]:
1gp0a_PU_1-19
CI=2.05


[20-36]:
1gp0a_PU_20-36
CI=1.75


[37-64]:
1gp0a_PU_37-64
CI=4.68


[65-81]:
1gp0a_PU_65-81
CI=0.99


[82-99]:
1gp0a_PU_82-99
CI=0.94


[100-116]:
1gp0a_PU_100-116
CI=0.00


[117-133 ]:
1gp0a_PU_117-133
CI=0.00