Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-46]:
1gpr0_PU0_1-46
CI=2.62


[47-124]:
1gpr0_PU0_47-124
CI=4.33


[125-158 ]:
1gpr0_PU0_125-158
CI=1.57


Level 1
PU
Molecule needs Java 1.4 Structure


[1-46]:
1gpr0_PU1_1-46
CI=2.62


[47-124]:
1gpr0_PU1_47-124
CI=4.33


[125-141]:
1gpr0_PU1_125-141
CI=0.21


[142-158 ]:
1gpr0_PU1_142-158
CI=0.98


Level 2
PU
Molecule needs Java 1.4 Structure


[1-24]:
1gpr0_PU2_1-24
CI=0.55


[25-46]:
1gpr0_PU2_25-46
CI=0.91


[47-124]:
1gpr0_PU2_47-124
CI=4.33


[125-141]:
1gpr0_PU2_125-141
CI=0.21


[142-158 ]:
1gpr0_PU2_142-158
CI=0.98


Final level 3

PU
Molecule needs Java 1.4 Structure


[1-24]:
1gpr0_PU_1-24
CI=0.55


[25-46]:
1gpr0_PU_25-46
CI=0.91


[47-62]:
1gpr0_PU_47-62
CI=0.00


[63-91]:
1gpr0_PU_63-91
CI=2.22


[92-124]:
1gpr0_PU_92-124
CI=1.39


[125-141]:
1gpr0_PU_125-141
CI=0.21


[142-158 ]:
1gpr0_PU_142-158
CI=0.98