Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-21]:
1gt91_PU0_1-21
CI=0.00


[22-122]:
1gt91_PU0_22-122
CI=3.95


[123-357 ]:
1gt91_PU0_123-357
CI=6.06


Level 1
PU
Molecule needs Java 1.4 Structure


[1-21]:
1gt91_PU1_1-21
CI=0.00


[22-122]:
1gt91_PU1_22-122
CI=3.95


[123-258]:
1gt91_PU1_123-258
CI=5.13


[259-275]:
1gt91_PU1_259-275
CI=2.09


[276-357 ]:
1gt91_PU1_276-357
CI=1.93


Level 2
PU
Molecule needs Java 1.4 Structure


[1-21]:
1gt91_PU2_1-21
CI=0.00


[22-122]:
1gt91_PU2_22-122
CI=3.95


[123-258]:
1gt91_PU2_123-258
CI=5.13


[259-275]:
1gt91_PU2_259-275
CI=2.09


[276-315]:
1gt91_PU2_276-315
CI=0.28


[316-345]:
1gt91_PU2_316-345
CI=2.97


[346-357 ]:
1gt91_PU2_346-357
CI=0.00


Level 3
PU
Molecule needs Java 1.4 Structure


[1-21]:
1gt91_PU3_1-21
CI=0.00


[22-122]:
1gt91_PU3_22-122
CI=3.95


[123-258]:
1gt91_PU3_123-258
CI=5.13


[259-275]:
1gt91_PU3_259-275
CI=2.09


[276-299]:
1gt91_PU3_276-299
CI=0.38


[300-315]:
1gt91_PU3_300-315
CI=0.11


[316-345]:
1gt91_PU3_316-345
CI=2.97


[346-357 ]:
1gt91_PU3_346-357
CI=0.00


Level 4
PU
Molecule needs Java 1.4 Structure


[1-21]:
1gt91_PU4_1-21
CI=0.00


[22-122]:
1gt91_PU4_22-122
CI=3.95


[123-192]:
1gt91_PU4_123-192
CI=3.75


[193-216]:
1gt91_PU4_193-216
CI=2.28


[217-258]:
1gt91_PU4_217-258
CI=2.36


[259-275]:
1gt91_PU4_259-275
CI=2.09


[276-299]:
1gt91_PU4_276-299
CI=0.38


[300-315]:
1gt91_PU4_300-315
CI=0.11


[316-345]:
1gt91_PU4_316-345
CI=2.97


[346-357 ]:
1gt91_PU4_346-357
CI=0.00


Level 5
PU
Molecule needs Java 1.4 Structure


[1-21]:
1gt91_PU5_1-21
CI=0.00


[22-99]:
1gt91_PU5_22-99
CI=3.72


[100-122]:
1gt91_PU5_100-122
CI=0.64


[123-192]:
1gt91_PU5_123-192
CI=3.75


[193-216]:
1gt91_PU5_193-216
CI=2.28


[217-258]:
1gt91_PU5_217-258
CI=2.36


[259-275]:
1gt91_PU5_259-275
CI=2.09


[276-299]:
1gt91_PU5_276-299
CI=0.38


[300-315]:
1gt91_PU5_300-315
CI=0.11


[316-345]:
1gt91_PU5_316-345
CI=2.97


[346-357 ]:
1gt91_PU5_346-357
CI=0.00


Level 6
PU
Molecule needs Java 1.4 Structure


[1-21]:
1gt91_PU6_1-21
CI=0.00


[22-99]:
1gt91_PU6_22-99
CI=3.72


[100-122]:
1gt91_PU6_100-122
CI=0.64


[123-138]:
1gt91_PU6_123-138
CI=0.00


[139-155]:
1gt91_PU6_139-155
CI=0.10


[156-192]:
1gt91_PU6_156-192
CI=3.34


[193-216]:
1gt91_PU6_193-216
CI=2.28


[217-258]:
1gt91_PU6_217-258
CI=2.36


[259-275]:
1gt91_PU6_259-275
CI=2.09


[276-299]:
1gt91_PU6_276-299
CI=0.38


[300-315]:
1gt91_PU6_300-315
CI=0.11


[316-345]:
1gt91_PU6_316-345
CI=2.97


[346-357 ]:
1gt91_PU6_346-357
CI=0.00


Level 7
PU
Molecule needs Java 1.4 Structure


[1-21]:
1gt91_PU7_1-21
CI=0.00


[22-37]:
1gt91_PU7_22-37
CI=0.00


[38-53]:
1gt91_PU7_38-53
CI=0.46


[54-99]:
1gt91_PU7_54-99
CI=1.92


[100-122]:
1gt91_PU7_100-122
CI=0.64


[123-138]:
1gt91_PU7_123-138
CI=0.00


[139-155]:
1gt91_PU7_139-155
CI=0.10


[156-192]:
1gt91_PU7_156-192
CI=3.34


[193-216]:
1gt91_PU7_193-216
CI=2.28


[217-258]:
1gt91_PU7_217-258
CI=2.36


[259-275]:
1gt91_PU7_259-275
CI=2.09


[276-299]:
1gt91_PU7_276-299
CI=0.38


[300-315]:
1gt91_PU7_300-315
CI=0.11


[316-345]:
1gt91_PU7_316-345
CI=2.97


[346-357 ]:
1gt91_PU7_346-357
CI=0.00


Level 8
PU
Molecule needs Java 1.4 Structure


[1-21]:
1gt91_PU8_1-21
CI=0.00


[22-37]:
1gt91_PU8_22-37
CI=0.00


[38-53]:
1gt91_PU8_38-53
CI=0.46


[54-79]:
1gt91_PU8_54-79
CI=0.64


[80-99]:
1gt91_PU8_80-99
CI=0.18


[100-122]:
1gt91_PU8_100-122
CI=0.64


[123-138]:
1gt91_PU8_123-138
CI=0.00


[139-155]:
1gt91_PU8_139-155
CI=0.10


[156-192]:
1gt91_PU8_156-192
CI=3.34


[193-216]:
1gt91_PU8_193-216
CI=2.28


[217-258]:
1gt91_PU8_217-258
CI=2.36


[259-275]:
1gt91_PU8_259-275
CI=2.09


[276-299]:
1gt91_PU8_276-299
CI=0.38


[300-315]:
1gt91_PU8_300-315
CI=0.11


[316-345]:
1gt91_PU8_316-345
CI=2.97


[346-357 ]:
1gt91_PU8_346-357
CI=0.00


Level 9
PU
Molecule needs Java 1.4 Structure


[1-21]:
1gt91_PU9_1-21
CI=0.00


[22-37]:
1gt91_PU9_22-37
CI=0.00


[38-53]:
1gt91_PU9_38-53
CI=0.46


[54-79]:
1gt91_PU9_54-79
CI=0.64


[80-99]:
1gt91_PU9_80-99
CI=0.18


[100-122]:
1gt91_PU9_100-122
CI=0.64


[123-138]:
1gt91_PU9_123-138
CI=0.00


[139-155]:
1gt91_PU9_139-155
CI=0.10


[156-192]:
1gt91_PU9_156-192
CI=3.34


[193-216]:
1gt91_PU9_193-216
CI=2.28


[217-236]:
1gt91_PU9_217-236
CI=0.00


[237-258]:
1gt91_PU9_237-258
CI=0.68


[259-275]:
1gt91_PU9_259-275
CI=2.09


[276-299]:
1gt91_PU9_276-299
CI=0.38


[300-315]:
1gt91_PU9_300-315
CI=0.11


[316-345]:
1gt91_PU9_316-345
CI=2.97


[346-357 ]:
1gt91_PU9_346-357
CI=0.00


Final level 10

PU
Molecule needs Java 1.4 Structure


[1-21]:
1gt91_PU_1-21
CI=0.00


[22-37]:
1gt91_PU_22-37
CI=0.00


[38-53]:
1gt91_PU_38-53
CI=0.46


[54-79]:
1gt91_PU_54-79
CI=0.64


[80-99]:
1gt91_PU_80-99
CI=0.18


[100-122]:
1gt91_PU_100-122
CI=0.64


[123-138]:
1gt91_PU_123-138
CI=0.00


[139-155]:
1gt91_PU_139-155
CI=0.10


[156-176]:
1gt91_PU_156-176
CI=0.45


[177-192]:
1gt91_PU_177-192
CI=0.81


[193-216]:
1gt91_PU_193-216
CI=2.28


[217-236]:
1gt91_PU_217-236
CI=0.00


[237-258]:
1gt91_PU_237-258
CI=0.68


[259-275]:
1gt91_PU_259-275
CI=2.09


[276-299]:
1gt91_PU_276-299
CI=0.38


[300-315]:
1gt91_PU_300-315
CI=0.11


[316-345]:
1gt91_PU_316-345
CI=2.97


[346-357 ]:
1gt91_PU_346-357
CI=0.00