Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-19]:
1gy7a_PU0_1-19
CI=0.00


[20-55]:
1gy7a_PU0_20-55
CI=2.58


[56-121 ]:
1gy7a_PU0_56-121
CI=4.50


Level 1
PU
Molecule needs Java 1.4 Structure


[1-19]:
1gy7a_PU1_1-19
CI=0.00


[20-55]:
1gy7a_PU1_20-55
CI=2.58


[56-96]:
1gy7a_PU1_56-96
CI=3.52


[97-121 ]:
1gy7a_PU1_97-121
CI=2.66


Level 2
PU
Molecule needs Java 1.4 Structure


[1-19]:
1gy7a_PU2_1-19
CI=0.00


[20-55]:
1gy7a_PU2_20-55
CI=2.58


[56-80]:
1gy7a_PU2_56-80
CI=1.29


[81-96]:
1gy7a_PU2_81-96
CI=2.09


[97-121 ]:
1gy7a_PU2_97-121
CI=2.66


Final level 3

PU
Molecule needs Java 1.4 Structure


[1-19]:
1gy7a_PU_1-19
CI=0.00


[20-36]:
1gy7a_PU_20-36
CI=0.00


[37-55]:
1gy7a_PU_37-55
CI=0.37


[56-80]:
1gy7a_PU_56-80
CI=1.29


[81-96]:
1gy7a_PU_81-96
CI=2.09


[97-121 ]:
1gy7a_PU_97-121
CI=2.66