Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-35]:
1gyva_PU0_1-35
CI=3.44


[36-110]:
1gyva_PU0_36-110
CI=4.35


[111-120 ]:
1gyva_PU0_111-120
CI=0.00


Level 1
PU
Molecule needs Java 1.4 Structure


[1-35]:
1gyva_PU1_1-35
CI=3.44


[36-90]:
1gyva_PU1_36-90
CI=3.64


[91-110]:
1gyva_PU1_91-110
CI=2.26


[111-120 ]:
1gyva_PU1_111-120
CI=0.00


Level 2
PU
Molecule needs Java 1.4 Structure


[1-35]:
1gyva_PU2_1-35
CI=3.44


[36-74]:
1gyva_PU2_36-74
CI=2.36


[75-90]:
1gyva_PU2_75-90
CI=0.00


[91-110]:
1gyva_PU2_91-110
CI=2.26


[111-120 ]:
1gyva_PU2_111-120
CI=0.00


Final level 3

PU
Molecule needs Java 1.4 Structure


[1-35]:
1gyva_PU_1-35
CI=3.44


[36-52]:
1gyva_PU_36-52
CI=0.10


[53-74]:
1gyva_PU_53-74
CI=0.09


[75-90]:
1gyva_PU_75-90
CI=0.00


[91-110]:
1gyva_PU_91-110
CI=2.26


[111-120 ]:
1gyva_PU_111-120
CI=0.00