Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-40]:
1gz2a_PU0_1-40
CI=1.42


[41-125]:
1gz2a_PU0_41-125
CI=3.87


[126-138 ]:
1gz2a_PU0_126-138
CI=0.00


Level 1
PU
Molecule needs Java 1.4 Structure


[1-17]:
1gz2a_PU1_1-17
CI=1.52


[18-40]:
1gz2a_PU1_18-40
CI=1.13


[41-125]:
1gz2a_PU1_41-125
CI=3.87


[126-138 ]:
1gz2a_PU1_126-138
CI=0.00


Level 2
PU
Molecule needs Java 1.4 Structure


[1-17]:
1gz2a_PU2_1-17
CI=1.52


[18-40]:
1gz2a_PU2_18-40
CI=1.13


[41-68]:
1gz2a_PU2_41-68
CI=1.01


[69-125]:
1gz2a_PU2_69-125
CI=3.82


[126-138 ]:
1gz2a_PU2_126-138
CI=0.00


Final level 3

PU
Molecule needs Java 1.4 Structure


[1-17]:
1gz2a_PU_1-17
CI=1.52


[18-40]:
1gz2a_PU_18-40
CI=1.13


[41-68]:
1gz2a_PU_41-68
CI=1.01


[69-94]:
1gz2a_PU_69-94
CI=1.59


[95-125]:
1gz2a_PU_95-125
CI=3.26


[126-138 ]:
1gz2a_PU_126-138
CI=0.00