Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-155]:
1h2ba_PU0_1-155
CI=4.75


[156-293]:
1h2ba_PU0_156-293
CI=4.85


[294-343 ]:
1h2ba_PU0_294-343
CI=1.47


Level 1
PU
Molecule needs Java 1.4 Structure


[1-155]:
1h2ba_PU1_1-155
CI=4.75


[156-293]:
1h2ba_PU1_156-293
CI=4.85


[294-312]:
1h2ba_PU1_294-312
CI=0.20


[313-343 ]:
1h2ba_PU1_313-343
CI=2.21


Level 2
PU
Molecule needs Java 1.4 Structure


[1-91]:
1h2ba_PU2_1-91
CI=3.05


[92-110]:
1h2ba_PU2_92-110
CI=2.52


[111-155]:
1h2ba_PU2_111-155
CI=0.46


[156-293]:
1h2ba_PU2_156-293
CI=4.85


[294-312]:
1h2ba_PU2_294-312
CI=0.20


[313-343 ]:
1h2ba_PU2_313-343
CI=2.21


Level 3
PU
Molecule needs Java 1.4 Structure


[1-91]:
1h2ba_PU3_1-91
CI=3.05


[92-110]:
1h2ba_PU3_92-110
CI=2.52


[111-133]:
1h2ba_PU3_111-133
CI=0.81


[134-155]:
1h2ba_PU3_134-155
CI=0.08


[156-293]:
1h2ba_PU3_156-293
CI=4.85


[294-312]:
1h2ba_PU3_294-312
CI=0.20


[313-343 ]:
1h2ba_PU3_313-343
CI=2.21


Level 4
PU
Molecule needs Java 1.4 Structure


[1-37]:
1h2ba_PU4_1-37
CI=1.29


[38-55]:
1h2ba_PU4_38-55
CI=0.10


[56-91]:
1h2ba_PU4_56-91
CI=1.80


[92-110]:
1h2ba_PU4_92-110
CI=2.52


[111-133]:
1h2ba_PU4_111-133
CI=0.81


[134-155]:
1h2ba_PU4_134-155
CI=0.08


[156-293]:
1h2ba_PU4_156-293
CI=4.85


[294-312]:
1h2ba_PU4_294-312
CI=0.20


[313-343 ]:
1h2ba_PU4_313-343
CI=2.21


Level 5
PU
Molecule needs Java 1.4 Structure


[1-17]:
1h2ba_PU5_1-17
CI=2.20


[18-37]:
1h2ba_PU5_18-37
CI=0.45


[38-55]:
1h2ba_PU5_38-55
CI=0.10


[56-91]:
1h2ba_PU5_56-91
CI=1.80


[92-110]:
1h2ba_PU5_92-110
CI=2.52


[111-133]:
1h2ba_PU5_111-133
CI=0.81


[134-155]:
1h2ba_PU5_134-155
CI=0.08


[156-293]:
1h2ba_PU5_156-293
CI=4.85


[294-312]:
1h2ba_PU5_294-312
CI=0.20


[313-343 ]:
1h2ba_PU5_313-343
CI=2.21


Level 6
PU
Molecule needs Java 1.4 Structure


[1-17]:
1h2ba_PU6_1-17
CI=2.20


[18-37]:
1h2ba_PU6_18-37
CI=0.45


[38-55]:
1h2ba_PU6_38-55
CI=0.10


[56-91]:
1h2ba_PU6_56-91
CI=1.80


[92-110]:
1h2ba_PU6_92-110
CI=2.52


[111-133]:
1h2ba_PU6_111-133
CI=0.81


[134-155]:
1h2ba_PU6_134-155
CI=0.08


[156-224]:
1h2ba_PU6_156-224
CI=4.03


[225-293]:
1h2ba_PU6_225-293
CI=3.60


[294-312]:
1h2ba_PU6_294-312
CI=0.20


[313-343 ]:
1h2ba_PU6_313-343
CI=2.21


Level 7
PU
Molecule needs Java 1.4 Structure


[1-17]:
1h2ba_PU7_1-17
CI=2.20


[18-37]:
1h2ba_PU7_18-37
CI=0.45


[38-55]:
1h2ba_PU7_38-55
CI=0.10


[56-91]:
1h2ba_PU7_56-91
CI=1.80


[92-110]:
1h2ba_PU7_92-110
CI=2.52


[111-133]:
1h2ba_PU7_111-133
CI=0.81


[134-155]:
1h2ba_PU7_134-155
CI=0.08


[156-201]:
1h2ba_PU7_156-201
CI=2.96


[202-224]:
1h2ba_PU7_202-224
CI=1.94


[225-293]:
1h2ba_PU7_225-293
CI=3.60


[294-312]:
1h2ba_PU7_294-312
CI=0.20


[313-343 ]:
1h2ba_PU7_313-343
CI=2.21


Level 8
PU
Molecule needs Java 1.4 Structure


[1-17]:
1h2ba_PU8_1-17
CI=2.20


[18-37]:
1h2ba_PU8_18-37
CI=0.45


[38-55]:
1h2ba_PU8_38-55
CI=0.10


[56-91]:
1h2ba_PU8_56-91
CI=1.80


[92-110]:
1h2ba_PU8_92-110
CI=2.52


[111-133]:
1h2ba_PU8_111-133
CI=0.81


[134-155]:
1h2ba_PU8_134-155
CI=0.08


[156-201]:
1h2ba_PU8_156-201
CI=2.96


[202-224]:
1h2ba_PU8_202-224
CI=1.94


[225-243]:
1h2ba_PU8_225-243
CI=0.58


[244-293]:
1h2ba_PU8_244-293
CI=3.07


[294-312]:
1h2ba_PU8_294-312
CI=0.20


[313-343 ]:
1h2ba_PU8_313-343
CI=2.21


Level 9
PU
Molecule needs Java 1.4 Structure


[1-17]:
1h2ba_PU9_1-17
CI=2.20


[18-37]:
1h2ba_PU9_18-37
CI=0.45


[38-55]:
1h2ba_PU9_38-55
CI=0.10


[56-91]:
1h2ba_PU9_56-91
CI=1.80


[92-110]:
1h2ba_PU9_92-110
CI=2.52


[111-133]:
1h2ba_PU9_111-133
CI=0.81


[134-155]:
1h2ba_PU9_134-155
CI=0.08


[156-201]:
1h2ba_PU9_156-201
CI=2.96


[202-224]:
1h2ba_PU9_202-224
CI=1.94


[225-243]:
1h2ba_PU9_225-243
CI=0.58


[244-275]:
1h2ba_PU9_244-275
CI=2.42


[276-293]:
1h2ba_PU9_276-293
CI=0.20


[294-312]:
1h2ba_PU9_294-312
CI=0.20


[313-343 ]:
1h2ba_PU9_313-343
CI=2.21


Final level 10

PU
Molecule needs Java 1.4 Structure


[1-17]:
1h2ba_PU_1-17
CI=2.20


[18-37]:
1h2ba_PU_18-37
CI=0.45


[38-55]:
1h2ba_PU_38-55
CI=0.10


[56-91]:
1h2ba_PU_56-91
CI=1.80


[92-110]:
1h2ba_PU_92-110
CI=2.52


[111-133]:
1h2ba_PU_111-133
CI=0.81


[134-155]:
1h2ba_PU_134-155
CI=0.08


[156-176]:
1h2ba_PU_156-176
CI=0.00


[177-201]:
1h2ba_PU_177-201
CI=1.27


[202-224]:
1h2ba_PU_202-224
CI=1.94


[225-243]:
1h2ba_PU_225-243
CI=0.58


[244-275]:
1h2ba_PU_244-275
CI=2.42


[276-293]:
1h2ba_PU_276-293
CI=0.20


[294-312]:
1h2ba_PU_294-312
CI=0.20


[313-343 ]:
1h2ba_PU_313-343
CI=2.21