Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-18]:
1h6la_PU0_1-18
CI=0.00


[19-178]:
1h6la_PU0_19-178
CI=5.55


[179-353 ]:
1h6la_PU0_179-353
CI=4.87


Level 1
PU
Molecule needs Java 1.4 Structure


[1-18]:
1h6la_PU1_1-18
CI=0.00


[19-178]:
1h6la_PU1_19-178
CI=5.55


[179-273]:
1h6la_PU1_179-273
CI=5.03


[274-343]:
1h6la_PU1_274-343
CI=3.13


[344-353 ]:
1h6la_PU1_344-353
CI=0.00


Level 2
PU
Molecule needs Java 1.4 Structure


[1-18]:
1h6la_PU2_1-18
CI=0.00


[19-115]:
1h6la_PU2_19-115
CI=5.11


[116-178]:
1h6la_PU2_116-178
CI=4.05


[179-273]:
1h6la_PU2_179-273
CI=5.03


[274-343]:
1h6la_PU2_274-343
CI=3.13


[344-353 ]:
1h6la_PU2_344-353
CI=0.00


Level 3
PU
Molecule needs Java 1.4 Structure


[1-18]:
1h6la_PU3_1-18
CI=0.00


[19-115]:
1h6la_PU3_19-115
CI=5.11


[116-178]:
1h6la_PU3_116-178
CI=4.05


[179-273]:
1h6la_PU3_179-273
CI=5.03


[274-326]:
1h6la_PU3_274-326
CI=3.57


[327-343]:
1h6la_PU3_327-343
CI=0.11


[344-353 ]:
1h6la_PU3_344-353
CI=0.00


Level 4
PU
Molecule needs Java 1.4 Structure


[1-18]:
1h6la_PU4_1-18
CI=0.00


[19-115]:
1h6la_PU4_19-115
CI=5.11


[116-178]:
1h6la_PU4_116-178
CI=4.05


[179-221]:
1h6la_PU4_179-221
CI=3.61


[222-273]:
1h6la_PU4_222-273
CI=4.16


[274-326]:
1h6la_PU4_274-326
CI=3.57


[327-343]:
1h6la_PU4_327-343
CI=0.11


[344-353 ]:
1h6la_PU4_344-353
CI=0.00


Level 5
PU
Molecule needs Java 1.4 Structure


[1-18]:
1h6la_PU5_1-18
CI=0.00


[19-74]:
1h6la_PU5_19-74
CI=4.66


[75-115]:
1h6la_PU5_75-115
CI=2.96


[116-178]:
1h6la_PU5_116-178
CI=4.05


[179-221]:
1h6la_PU5_179-221
CI=3.61


[222-273]:
1h6la_PU5_222-273
CI=4.16


[274-326]:
1h6la_PU5_274-326
CI=3.57


[327-343]:
1h6la_PU5_327-343
CI=0.11


[344-353 ]:
1h6la_PU5_344-353
CI=0.00


Level 6
PU
Molecule needs Java 1.4 Structure


[1-18]:
1h6la_PU6_1-18
CI=0.00


[19-74]:
1h6la_PU6_19-74
CI=4.66


[75-115]:
1h6la_PU6_75-115
CI=2.96


[116-131]:
1h6la_PU6_116-131
CI=0.11


[132-148]:
1h6la_PU6_132-148
CI=2.29


[149-178]:
1h6la_PU6_149-178
CI=3.05


[179-221]:
1h6la_PU6_179-221
CI=3.61


[222-273]:
1h6la_PU6_222-273
CI=4.16


[274-326]:
1h6la_PU6_274-326
CI=3.57


[327-343]:
1h6la_PU6_327-343
CI=0.11


[344-353 ]:
1h6la_PU6_344-353
CI=0.00


Level 7
PU
Molecule needs Java 1.4 Structure


[1-18]:
1h6la_PU7_1-18
CI=0.00


[19-74]:
1h6la_PU7_19-74
CI=4.66


[75-91]:
1h6la_PU7_75-91
CI=2.19


[92-115]:
1h6la_PU7_92-115
CI=1.73


[116-131]:
1h6la_PU7_116-131
CI=0.11


[132-148]:
1h6la_PU7_132-148
CI=2.29


[149-178]:
1h6la_PU7_149-178
CI=3.05


[179-221]:
1h6la_PU7_179-221
CI=3.61


[222-273]:
1h6la_PU7_222-273
CI=4.16


[274-326]:
1h6la_PU7_274-326
CI=3.57


[327-343]:
1h6la_PU7_327-343
CI=0.11


[344-353 ]:
1h6la_PU7_344-353
CI=0.00


Level 8
PU
Molecule needs Java 1.4 Structure


[1-18]:
1h6la_PU8_1-18
CI=0.00


[19-74]:
1h6la_PU8_19-74
CI=4.66


[75-91]:
1h6la_PU8_75-91
CI=2.19


[92-115]:
1h6la_PU8_92-115
CI=1.73


[116-131]:
1h6la_PU8_116-131
CI=0.11


[132-148]:
1h6la_PU8_132-148
CI=2.29


[149-178]:
1h6la_PU8_149-178
CI=3.05


[179-200]:
1h6la_PU8_179-200
CI=2.64


[201-221]:
1h6la_PU8_201-221
CI=2.14


[222-273]:
1h6la_PU8_222-273
CI=4.16


[274-326]:
1h6la_PU8_274-326
CI=3.57


[327-343]:
1h6la_PU8_327-343
CI=0.11


[344-353 ]:
1h6la_PU8_344-353
CI=0.00


Level 9
PU
Molecule needs Java 1.4 Structure


[1-18]:
1h6la_PU9_1-18
CI=0.00


[19-74]:
1h6la_PU9_19-74
CI=4.66


[75-91]:
1h6la_PU9_75-91
CI=2.19


[92-115]:
1h6la_PU9_92-115
CI=1.73


[116-131]:
1h6la_PU9_116-131
CI=0.11


[132-148]:
1h6la_PU9_132-148
CI=2.29


[149-178]:
1h6la_PU9_149-178
CI=3.05


[179-200]:
1h6la_PU9_179-200
CI=2.64


[201-221]:
1h6la_PU9_201-221
CI=2.14


[222-253]:
1h6la_PU9_222-253
CI=3.04


[254-273]:
1h6la_PU9_254-273
CI=2.53


[274-326]:
1h6la_PU9_274-326
CI=3.57


[327-343]:
1h6la_PU9_327-343
CI=0.11


[344-353 ]:
1h6la_PU9_344-353
CI=0.00


Level 10
PU
Molecule needs Java 1.4 Structure


[1-18]:
1h6la_PU10_1-18
CI=0.00


[19-74]:
1h6la_PU10_19-74
CI=4.66


[75-91]:
1h6la_PU10_75-91
CI=2.19


[92-115]:
1h6la_PU10_92-115
CI=1.73


[116-131]:
1h6la_PU10_116-131
CI=0.11


[132-148]:
1h6la_PU10_132-148
CI=2.29


[149-178]:
1h6la_PU10_149-178
CI=3.05


[179-200]:
1h6la_PU10_179-200
CI=2.64


[201-221]:
1h6la_PU10_201-221
CI=2.14


[222-253]:
1h6la_PU10_222-253
CI=3.04


[254-273]:
1h6la_PU10_254-273
CI=2.53


[274-307]:
1h6la_PU10_274-307
CI=2.35


[308-326]:
1h6la_PU10_308-326
CI=1.68


[327-343]:
1h6la_PU10_327-343
CI=0.11


[344-353 ]:
1h6la_PU10_344-353
CI=0.00


Level 11
PU
Molecule needs Java 1.4 Structure


[1-18]:
1h6la_PU11_1-18
CI=0.00


[19-74]:
1h6la_PU11_19-74
CI=4.66


[75-91]:
1h6la_PU11_75-91
CI=2.19


[92-115]:
1h6la_PU11_92-115
CI=1.73


[116-131]:
1h6la_PU11_116-131
CI=0.11


[132-148]:
1h6la_PU11_132-148
CI=2.29


[149-178]:
1h6la_PU11_149-178
CI=3.05


[179-200]:
1h6la_PU11_179-200
CI=2.64


[201-221]:
1h6la_PU11_201-221
CI=2.14


[222-253]:
1h6la_PU11_222-253
CI=3.04


[254-273]:
1h6la_PU11_254-273
CI=2.53


[274-290]:
1h6la_PU11_274-290
CI=0.44


[291-307]:
1h6la_PU11_291-307
CI=1.64


[308-326]:
1h6la_PU11_308-326
CI=1.68


[327-343]:
1h6la_PU11_327-343
CI=0.11


[344-353 ]:
1h6la_PU11_344-353
CI=0.00


Final level 12

PU
Molecule needs Java 1.4 Structure


[1-18]:
1h6la_PU_1-18
CI=0.00


[19-46]:
1h6la_PU_19-46
CI=2.11


[47-74]:
1h6la_PU_47-74
CI=2.98


[75-91]:
1h6la_PU_75-91
CI=2.19


[92-115]:
1h6la_PU_92-115
CI=1.73


[116-131]:
1h6la_PU_116-131
CI=0.11


[132-148]:
1h6la_PU_132-148
CI=2.29


[149-178]:
1h6la_PU_149-178
CI=3.05


[179-200]:
1h6la_PU_179-200
CI=2.64


[201-221]:
1h6la_PU_201-221
CI=2.14


[222-253]:
1h6la_PU_222-253
CI=3.04


[254-273]:
1h6la_PU_254-273
CI=2.53


[274-290]:
1h6la_PU_274-290
CI=0.44


[291-307]:
1h6la_PU_291-307
CI=1.64


[308-326]:
1h6la_PU_308-326
CI=1.68


[327-343]:
1h6la_PU_327-343
CI=0.11


[344-353 ]:
1h6la_PU_344-353
CI=0.00