Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-21]:
1h7ca_PU0_1-21
CI=0.00


[22-56]:
1h7ca_PU0_22-56
CI=0.97


[57-99 ]:
1h7ca_PU0_57-99
CI=0.39


Level 1
PU
Molecule needs Java 1.4 Structure


[1-21]:
1h7ca_PU1_1-21
CI=0.00


[22-56]:
1h7ca_PU1_22-56
CI=0.97


[57-73]:
1h7ca_PU1_57-73
CI=0.00


[74-99 ]:
1h7ca_PU1_74-99
CI=0.28


Final level 2

PU
Molecule needs Java 1.4 Structure


[1-21]:
1h7ca_PU_1-21
CI=0.00


[22-40]:
1h7ca_PU_22-40
CI=0.00


[41-56]:
1h7ca_PU_41-56
CI=0.00


[57-73]:
1h7ca_PU_57-73
CI=0.00


[74-99 ]:
1h7ca_PU_74-99
CI=0.28