Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-46]:
1h8pa_PU0_1-46
CI=3.92


[47-88 ]:
1h8pa_PU0_47-88
CI=4.38


Level 1
PU
Molecule needs Java 1.4 Structure


[1-46]:
1h8pa_PU1_1-46
CI=3.92


[47-63]:
1h8pa_PU1_47-63
CI=1.31


[64-88 ]:
1h8pa_PU1_64-88
CI=2.35


Final level 2

PU
Molecule needs Java 1.4 Structure


[1-17]:
1h8pa_PU_1-17
CI=1.41


[18-46]:
1h8pa_PU_18-46
CI=2.21


[47-63]:
1h8pa_PU_47-63
CI=1.31


[64-88 ]:
1h8pa_PU_64-88
CI=2.35