Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-25]:
1hdka_PU0_1-25
CI=0.00


[26-86]:
1hdka_PU0_26-86
CI=4.03


[87-139 ]:
1hdka_PU0_87-139
CI=1.75


Level 1
PU
Molecule needs Java 1.4 Structure


[1-25]:
1hdka_PU1_1-25
CI=0.00


[26-86]:
1hdka_PU1_26-86
CI=4.03


[87-120]:
1hdka_PU1_87-120
CI=2.59


[121-139 ]:
1hdka_PU1_121-139
CI=0.19


Level 2
PU
Molecule needs Java 1.4 Structure


[1-25]:
1hdka_PU2_1-25
CI=0.00


[26-57]:
1hdka_PU2_26-57
CI=2.81


[58-86]:
1hdka_PU2_58-86
CI=2.29


[87-120]:
1hdka_PU2_87-120
CI=2.59


[121-139 ]:
1hdka_PU2_121-139
CI=0.19


Final level 3

PU
Molecule needs Java 1.4 Structure


[1-25]:
1hdka_PU_1-25
CI=0.00


[26-57]:
1hdka_PU_26-57
CI=2.81


[58-86]:
1hdka_PU_58-86
CI=2.29


[87-104]:
1hdka_PU_87-104
CI=2.18


[105-120]:
1hdka_PU_105-120
CI=0.00


[121-139 ]:
1hdka_PU_121-139
CI=0.19