Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-17]:
1he1a_PU0_1-17
CI=0.00


[18-135 ]:
1he1a_PU0_18-135
CI=3.02


Level 1
PU
Molecule needs Java 1.4 Structure


[1-17]:
1he1a_PU1_1-17
CI=0.00


[18-37]:
1he1a_PU1_18-37
CI=0.00


[38-103]:
1he1a_PU1_38-103
CI=3.02


[104-135 ]:
1he1a_PU1_104-135
CI=0.00


Level 2
PU
Molecule needs Java 1.4 Structure


[1-17]:
1he1a_PU2_1-17
CI=0.00


[18-37]:
1he1a_PU2_18-37
CI=0.00


[38-53]:
1he1a_PU2_38-53
CI=1.48


[54-89]:
1he1a_PU2_54-89
CI=2.37


[90-103]:
1he1a_PU2_90-103
CI=0.38


[104-135 ]:
1he1a_PU2_104-135
CI=0.00


Final level 3

PU
Molecule needs Java 1.4 Structure


[1-17]:
1he1a_PU_1-17
CI=0.00


[18-37]:
1he1a_PU_18-37
CI=0.00


[38-53]:
1he1a_PU_38-53
CI=1.48


[54-73]:
1he1a_PU_54-73
CI=0.74


[74-89]:
1he1a_PU_74-89
CI=1.74


[90-103]:
1he1a_PU_90-103
CI=0.38


[104-135 ]:
1he1a_PU_104-135
CI=0.00