Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-126]:
1hf8a_PU0_1-126
CI=2.35


[127-263 ]:
1hf8a_PU0_127-263
CI=1.68


Level 1
PU
Molecule needs Java 1.4 Structure


[1-71]:
1hf8a_PU1_1-71
CI=2.21


[72-126]:
1hf8a_PU1_72-126
CI=1.46


[127-263 ]:
1hf8a_PU1_127-263
CI=1.68


Level 2
PU
Molecule needs Java 1.4 Structure


[1-71]:
1hf8a_PU2_1-71
CI=2.21


[72-126]:
1hf8a_PU2_72-126
CI=1.46


[127-164]:
1hf8a_PU2_127-164
CI=0.64


[165-181]:
1hf8a_PU2_165-181
CI=0.11


[182-263 ]:
1hf8a_PU2_182-263
CI=0.59


Level 3
PU
Molecule needs Java 1.4 Structure


[1-71]:
1hf8a_PU3_1-71
CI=2.21


[72-126]:
1hf8a_PU3_72-126
CI=1.46


[127-164]:
1hf8a_PU3_127-164
CI=0.64


[165-181]:
1hf8a_PU3_165-181
CI=0.11


[182-222]:
1hf8a_PU3_182-222
CI=0.41


[223-250]:
1hf8a_PU3_223-250
CI=0.20


[251-263 ]:
1hf8a_PU3_251-263
CI=0.00


Level 4
PU
Molecule needs Java 1.4 Structure


[1-71]:
1hf8a_PU4_1-71
CI=2.21


[72-126]:
1hf8a_PU4_72-126
CI=1.46


[127-164]:
1hf8a_PU4_127-164
CI=0.64


[165-181]:
1hf8a_PU4_165-181
CI=0.11


[182-198]:
1hf8a_PU4_182-198
CI=0.00


[199-222]:
1hf8a_PU4_199-222
CI=0.46


[223-250]:
1hf8a_PU4_223-250
CI=0.20


[251-263 ]:
1hf8a_PU4_251-263
CI=0.00


Level 5
PU
Molecule needs Java 1.4 Structure


[1-71]:
1hf8a_PU5_1-71
CI=2.21


[72-126]:
1hf8a_PU5_72-126
CI=1.46


[127-148]:
1hf8a_PU5_127-148
CI=0.84


[149-164]:
1hf8a_PU5_149-164
CI=0.00


[165-181]:
1hf8a_PU5_165-181
CI=0.11


[182-198]:
1hf8a_PU5_182-198
CI=0.00


[199-222]:
1hf8a_PU5_199-222
CI=0.46


[223-250]:
1hf8a_PU5_223-250
CI=0.20


[251-263 ]:
1hf8a_PU5_251-263
CI=0.00


Level 6
PU
Molecule needs Java 1.4 Structure


[1-27]:
1hf8a_PU6_1-27
CI=1.24


[28-43]:
1hf8a_PU6_28-43
CI=0.23


[44-71]:
1hf8a_PU6_44-71
CI=0.73


[72-126]:
1hf8a_PU6_72-126
CI=1.46


[127-148]:
1hf8a_PU6_127-148
CI=0.84


[149-164]:
1hf8a_PU6_149-164
CI=0.00


[165-181]:
1hf8a_PU6_165-181
CI=0.11


[182-198]:
1hf8a_PU6_182-198
CI=0.00


[199-222]:
1hf8a_PU6_199-222
CI=0.46


[223-250]:
1hf8a_PU6_223-250
CI=0.20


[251-263 ]:
1hf8a_PU6_251-263
CI=0.00


Level 7
PU
Molecule needs Java 1.4 Structure


[1-27]:
1hf8a_PU7_1-27
CI=1.24


[28-43]:
1hf8a_PU7_28-43
CI=0.23


[44-71]:
1hf8a_PU7_44-71
CI=0.73


[72-110]:
1hf8a_PU7_72-110
CI=0.92


[111-126]:
1hf8a_PU7_111-126
CI=0.35


[127-148]:
1hf8a_PU7_127-148
CI=0.84


[149-164]:
1hf8a_PU7_149-164
CI=0.00


[165-181]:
1hf8a_PU7_165-181
CI=0.11


[182-198]:
1hf8a_PU7_182-198
CI=0.00


[199-222]:
1hf8a_PU7_199-222
CI=0.46


[223-250]:
1hf8a_PU7_223-250
CI=0.20


[251-263 ]:
1hf8a_PU7_251-263
CI=0.00


Final level 8

PU
Molecule needs Java 1.4 Structure


[1-27]:
1hf8a_PU_1-27
CI=1.24


[28-43]:
1hf8a_PU_28-43
CI=0.23


[44-71]:
1hf8a_PU_44-71
CI=0.73


[72-88]:
1hf8a_PU_72-88
CI=0.11


[89-110]:
1hf8a_PU_89-110
CI=1.26


[111-126]:
1hf8a_PU_111-126
CI=0.35


[127-148]:
1hf8a_PU_127-148
CI=0.84


[149-164]:
1hf8a_PU_149-164
CI=0.00


[165-181]:
1hf8a_PU_165-181
CI=0.11


[182-198]:
1hf8a_PU_182-198
CI=0.00


[199-222]:
1hf8a_PU_199-222
CI=0.46


[223-250]:
1hf8a_PU_223-250
CI=0.20


[251-263 ]:
1hf8a_PU_251-263
CI=0.00