Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-31]:
1hjxa_PU0_1-31
CI=1.41


[32-182]:
1hjxa_PU0_32-182
CI=3.42


[183-361 ]:
1hjxa_PU0_183-361
CI=4.92


Level 1
PU
Molecule needs Java 1.4 Structure


[1-31]:
1hjxa_PU1_1-31
CI=1.41


[32-48]:
1hjxa_PU1_32-48
CI=1.10


[49-68]:
1hjxa_PU1_49-68
CI=0.00


[69-182]:
1hjxa_PU1_69-182
CI=3.12


[183-361 ]:
1hjxa_PU1_183-361
CI=4.92


Level 2
PU
Molecule needs Java 1.4 Structure


[1-31]:
1hjxa_PU2_1-31
CI=1.41


[32-48]:
1hjxa_PU2_32-48
CI=1.10


[49-68]:
1hjxa_PU2_49-68
CI=0.00


[69-182]:
1hjxa_PU2_69-182
CI=3.12


[183-308]:
1hjxa_PU2_183-308
CI=4.88


[309-361 ]:
1hjxa_PU2_309-361
CI=2.11


Level 3
PU
Molecule needs Java 1.4 Structure


[1-31]:
1hjxa_PU3_1-31
CI=1.41


[32-48]:
1hjxa_PU3_32-48
CI=1.10


[49-68]:
1hjxa_PU3_49-68
CI=0.00


[69-182]:
1hjxa_PU3_69-182
CI=3.12


[183-218]:
1hjxa_PU3_183-218
CI=3.16


[219-237]:
1hjxa_PU3_219-237
CI=0.29


[238-308]:
1hjxa_PU3_238-308
CI=4.35


[309-361 ]:
1hjxa_PU3_309-361
CI=2.11


Level 4
PU
Molecule needs Java 1.4 Structure


[1-31]:
1hjxa_PU4_1-31
CI=1.41


[32-48]:
1hjxa_PU4_32-48
CI=1.10


[49-68]:
1hjxa_PU4_49-68
CI=0.00


[69-119]:
1hjxa_PU4_69-119
CI=2.03


[120-182]:
1hjxa_PU4_120-182
CI=2.23


[183-218]:
1hjxa_PU4_183-218
CI=3.16


[219-237]:
1hjxa_PU4_219-237
CI=0.29


[238-308]:
1hjxa_PU4_238-308
CI=4.35


[309-361 ]:
1hjxa_PU4_309-361
CI=2.11


Level 5
PU
Molecule needs Java 1.4 Structure


[1-31]:
1hjxa_PU5_1-31
CI=1.41


[32-48]:
1hjxa_PU5_32-48
CI=1.10


[49-68]:
1hjxa_PU5_49-68
CI=0.00


[69-119]:
1hjxa_PU5_69-119
CI=2.03


[120-135]:
1hjxa_PU5_120-135
CI=0.11


[136-157]:
1hjxa_PU5_136-157
CI=0.76


[158-182]:
1hjxa_PU5_158-182
CI=0.60


[183-218]:
1hjxa_PU5_183-218
CI=3.16


[219-237]:
1hjxa_PU5_219-237
CI=0.29


[238-308]:
1hjxa_PU5_238-308
CI=4.35


[309-361 ]:
1hjxa_PU5_309-361
CI=2.11


Level 6
PU
Molecule needs Java 1.4 Structure


[1-31]:
1hjxa_PU6_1-31
CI=1.41


[32-48]:
1hjxa_PU6_32-48
CI=1.10


[49-68]:
1hjxa_PU6_49-68
CI=0.00


[69-119]:
1hjxa_PU6_69-119
CI=2.03


[120-135]:
1hjxa_PU6_120-135
CI=0.11


[136-157]:
1hjxa_PU6_136-157
CI=0.76


[158-182]:
1hjxa_PU6_158-182
CI=0.60


[183-218]:
1hjxa_PU6_183-218
CI=3.16


[219-237]:
1hjxa_PU6_219-237
CI=0.29


[238-308]:
1hjxa_PU6_238-308
CI=4.35


[309-330]:
1hjxa_PU6_309-330
CI=0.42


[331-361 ]:
1hjxa_PU6_331-361
CI=1.51


Final level 7

PU
Molecule needs Java 1.4 Structure


[1-31]:
1hjxa_PU_1-31
CI=1.41


[32-48]:
1hjxa_PU_32-48
CI=1.10


[49-68]:
1hjxa_PU_49-68
CI=0.00


[69-119]:
1hjxa_PU_69-119
CI=2.03


[120-135]:
1hjxa_PU_120-135
CI=0.11


[136-157]:
1hjxa_PU_136-157
CI=0.76


[158-182]:
1hjxa_PU_158-182
CI=0.60


[183-218]:
1hjxa_PU_183-218
CI=3.16


[219-237]:
1hjxa_PU_219-237
CI=0.29


[238-261]:
1hjxa_PU_238-261
CI=2.28


[262-284]:
1hjxa_PU_262-284
CI=1.31


[285-308]:
1hjxa_PU_285-308
CI=2.76


[309-330]:
1hjxa_PU_309-330
CI=0.42


[331-361 ]:
1hjxa_PU_331-361
CI=1.51