Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-167]:
1hq0a_PU0_1-167
CI=4.97


[168-250]:
1hq0a_PU0_168-250
CI=2.54


[251-295 ]:
1hq0a_PU0_251-295
CI=3.68


Level 1
PU
Molecule needs Java 1.4 Structure


[1-167]:
1hq0a_PU1_1-167
CI=4.97


[168-200]:
1hq0a_PU1_168-200
CI=0.81


[201-250]:
1hq0a_PU1_201-250
CI=2.85


[251-295 ]:
1hq0a_PU1_251-295
CI=3.68


Level 2
PU
Molecule needs Java 1.4 Structure


[1-22]:
1hq0a_PU2_1-22
CI=0.58


[23-167]:
1hq0a_PU2_23-167
CI=5.33


[168-200]:
1hq0a_PU2_168-200
CI=0.81


[201-250]:
1hq0a_PU2_201-250
CI=2.85


[251-295 ]:
1hq0a_PU2_251-295
CI=3.68


Level 3
PU
Molecule needs Java 1.4 Structure


[1-22]:
1hq0a_PU3_1-22
CI=0.58


[23-85]:
1hq0a_PU3_23-85
CI=2.87


[86-108]:
1hq0a_PU3_86-108
CI=2.45


[109-167]:
1hq0a_PU3_109-167
CI=4.30


[168-200]:
1hq0a_PU3_168-200
CI=0.81


[201-250]:
1hq0a_PU3_201-250
CI=2.85


[251-295 ]:
1hq0a_PU3_251-295
CI=3.68


Level 4
PU
Molecule needs Java 1.4 Structure


[1-22]:
1hq0a_PU4_1-22
CI=0.58


[23-38]:
1hq0a_PU4_23-38
CI=0.00


[39-57]:
1hq0a_PU4_39-57
CI=2.06


[58-85]:
1hq0a_PU4_58-85
CI=1.81


[86-108]:
1hq0a_PU4_86-108
CI=2.45


[109-167]:
1hq0a_PU4_109-167
CI=4.30


[168-200]:
1hq0a_PU4_168-200
CI=0.81


[201-250]:
1hq0a_PU4_201-250
CI=2.85


[251-295 ]:
1hq0a_PU4_251-295
CI=3.68


Level 5
PU
Molecule needs Java 1.4 Structure


[1-22]:
1hq0a_PU5_1-22
CI=0.58


[23-38]:
1hq0a_PU5_23-38
CI=0.00


[39-57]:
1hq0a_PU5_39-57
CI=2.06


[58-85]:
1hq0a_PU5_58-85
CI=1.81


[86-108]:
1hq0a_PU5_86-108
CI=2.45


[109-167]:
1hq0a_PU5_109-167
CI=4.30


[168-184]:
1hq0a_PU5_168-184
CI=0.00


[185-200]:
1hq0a_PU5_185-200
CI=0.34


[201-250]:
1hq0a_PU5_201-250
CI=2.85


[251-295 ]:
1hq0a_PU5_251-295
CI=3.68


Level 6
PU
Molecule needs Java 1.4 Structure


[1-22]:
1hq0a_PU6_1-22
CI=0.58


[23-38]:
1hq0a_PU6_23-38
CI=0.00


[39-57]:
1hq0a_PU6_39-57
CI=2.06


[58-85]:
1hq0a_PU6_58-85
CI=1.81


[86-108]:
1hq0a_PU6_86-108
CI=2.45


[109-167]:
1hq0a_PU6_109-167
CI=4.30


[168-184]:
1hq0a_PU6_168-184
CI=0.00


[185-200]:
1hq0a_PU6_185-200
CI=0.34


[201-250]:
1hq0a_PU6_201-250
CI=2.85


[251-273]:
1hq0a_PU6_251-273
CI=2.14


[274-295 ]:
1hq0a_PU6_274-295
CI=1.90


Level 7
PU
Molecule needs Java 1.4 Structure


[1-22]:
1hq0a_PU7_1-22
CI=0.58


[23-38]:
1hq0a_PU7_23-38
CI=0.00


[39-57]:
1hq0a_PU7_39-57
CI=2.06


[58-85]:
1hq0a_PU7_58-85
CI=1.81


[86-108]:
1hq0a_PU7_86-108
CI=2.45


[109-143]:
1hq0a_PU7_109-143
CI=1.96


[144-167]:
1hq0a_PU7_144-167
CI=2.05


[168-184]:
1hq0a_PU7_168-184
CI=0.00


[185-200]:
1hq0a_PU7_185-200
CI=0.34


[201-250]:
1hq0a_PU7_201-250
CI=2.85


[251-273]:
1hq0a_PU7_251-273
CI=2.14


[274-295 ]:
1hq0a_PU7_274-295
CI=1.90


Level 8
PU
Molecule needs Java 1.4 Structure


[1-22]:
1hq0a_PU8_1-22
CI=0.58


[23-38]:
1hq0a_PU8_23-38
CI=0.00


[39-57]:
1hq0a_PU8_39-57
CI=2.06


[58-85]:
1hq0a_PU8_58-85
CI=1.81


[86-108]:
1hq0a_PU8_86-108
CI=2.45


[109-126]:
1hq0a_PU8_109-126
CI=0.73


[127-143]:
1hq0a_PU8_127-143
CI=0.11


[144-167]:
1hq0a_PU8_144-167
CI=2.05


[168-184]:
1hq0a_PU8_168-184
CI=0.00


[185-200]:
1hq0a_PU8_185-200
CI=0.34


[201-250]:
1hq0a_PU8_201-250
CI=2.85


[251-273]:
1hq0a_PU8_251-273
CI=2.14


[274-295 ]:
1hq0a_PU8_274-295
CI=1.90


Final level 9

PU
Molecule needs Java 1.4 Structure


[1-22]:
1hq0a_PU_1-22
CI=0.58


[23-38]:
1hq0a_PU_23-38
CI=0.00


[39-57]:
1hq0a_PU_39-57
CI=2.06


[58-85]:
1hq0a_PU_58-85
CI=1.81


[86-108]:
1hq0a_PU_86-108
CI=2.45


[109-126]:
1hq0a_PU_109-126
CI=0.73


[127-143]:
1hq0a_PU_127-143
CI=0.11


[144-167]:
1hq0a_PU_144-167
CI=2.05


[168-184]:
1hq0a_PU_168-184
CI=0.00


[185-200]:
1hq0a_PU_185-200
CI=0.34


[201-222]:
1hq0a_PU_201-222
CI=0.17


[223-250]:
1hq0a_PU_223-250
CI=0.61


[251-273]:
1hq0a_PU_251-273
CI=2.14


[274-295 ]:
1hq0a_PU_274-295
CI=1.90