Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-248]:
1hx6a_PU0_1-248
CI=5.11


[249-362]:
1hx6a_PU0_249-362
CI=4.52


[363-370 ]:
1hx6a_PU0_363-370
CI=0.00


Level 1
PU
Molecule needs Java 1.4 Structure


[1-116]:
1hx6a_PU1_1-116
CI=0.89


[117-132]:
1hx6a_PU1_117-132
CI=0.46


[133-248]:
1hx6a_PU1_133-248
CI=1.96


[249-362]:
1hx6a_PU1_249-362
CI=4.52


[363-370 ]:
1hx6a_PU1_363-370
CI=0.00


Level 2
PU
Molecule needs Java 1.4 Structure


[1-22]:
1hx6a_PU2_1-22
CI=0.00


[23-116]:
1hx6a_PU2_23-116
CI=1.09


[117-132]:
1hx6a_PU2_117-132
CI=0.46


[133-248]:
1hx6a_PU2_133-248
CI=1.96


[249-362]:
1hx6a_PU2_249-362
CI=4.52


[363-370 ]:
1hx6a_PU2_363-370
CI=0.00


Level 3
PU
Molecule needs Java 1.4 Structure


[1-22]:
1hx6a_PU3_1-22
CI=0.00


[23-116]:
1hx6a_PU3_23-116
CI=1.09


[117-132]:
1hx6a_PU3_117-132
CI=0.46


[133-182]:
1hx6a_PU3_133-182
CI=1.30


[183-214]:
1hx6a_PU3_183-214
CI=2.20


[215-248]:
1hx6a_PU3_215-248
CI=0.39


[249-362]:
1hx6a_PU3_249-362
CI=4.52


[363-370 ]:
1hx6a_PU3_363-370
CI=0.00


Level 4
PU
Molecule needs Java 1.4 Structure


[1-22]:
1hx6a_PU4_1-22
CI=0.00


[23-116]:
1hx6a_PU4_23-116
CI=1.09


[117-132]:
1hx6a_PU4_117-132
CI=0.46


[133-151]:
1hx6a_PU4_133-151
CI=1.76


[152-182]:
1hx6a_PU4_152-182
CI=0.98


[183-214]:
1hx6a_PU4_183-214
CI=2.20


[215-248]:
1hx6a_PU4_215-248
CI=0.39


[249-362]:
1hx6a_PU4_249-362
CI=4.52


[363-370 ]:
1hx6a_PU4_363-370
CI=0.00


Level 5
PU
Molecule needs Java 1.4 Structure


[1-22]:
1hx6a_PU5_1-22
CI=0.00


[23-72]:
1hx6a_PU5_23-72
CI=0.26


[73-116]:
1hx6a_PU5_73-116
CI=1.97


[117-132]:
1hx6a_PU5_117-132
CI=0.46


[133-151]:
1hx6a_PU5_133-151
CI=1.76


[152-182]:
1hx6a_PU5_152-182
CI=0.98


[183-214]:
1hx6a_PU5_183-214
CI=2.20


[215-248]:
1hx6a_PU5_215-248
CI=0.39


[249-362]:
1hx6a_PU5_249-362
CI=4.52


[363-370 ]:
1hx6a_PU5_363-370
CI=0.00


Level 6
PU
Molecule needs Java 1.4 Structure


[1-22]:
1hx6a_PU6_1-22
CI=0.00


[23-56]:
1hx6a_PU6_23-56
CI=0.33


[57-72]:
1hx6a_PU6_57-72
CI=0.12


[73-116]:
1hx6a_PU6_73-116
CI=1.97


[117-132]:
1hx6a_PU6_117-132
CI=0.46


[133-151]:
1hx6a_PU6_133-151
CI=1.76


[152-182]:
1hx6a_PU6_152-182
CI=0.98


[183-214]:
1hx6a_PU6_183-214
CI=2.20


[215-248]:
1hx6a_PU6_215-248
CI=0.39


[249-362]:
1hx6a_PU6_249-362
CI=4.52


[363-370 ]:
1hx6a_PU6_363-370
CI=0.00


Level 7
PU
Molecule needs Java 1.4 Structure


[1-22]:
1hx6a_PU7_1-22
CI=0.00


[23-56]:
1hx6a_PU7_23-56
CI=0.33


[57-72]:
1hx6a_PU7_57-72
CI=0.12


[73-116]:
1hx6a_PU7_73-116
CI=1.97


[117-132]:
1hx6a_PU7_117-132
CI=0.46


[133-151]:
1hx6a_PU7_133-151
CI=1.76


[152-182]:
1hx6a_PU7_152-182
CI=0.98


[183-214]:
1hx6a_PU7_183-214
CI=2.20


[215-232]:
1hx6a_PU7_215-232
CI=0.00


[233-248]:
1hx6a_PU7_233-248
CI=0.00


[249-362]:
1hx6a_PU7_249-362
CI=4.52


[363-370 ]:
1hx6a_PU7_363-370
CI=0.00


Level 8
PU
Molecule needs Java 1.4 Structure


[1-22]:
1hx6a_PU8_1-22
CI=0.00


[23-56]:
1hx6a_PU8_23-56
CI=0.33


[57-72]:
1hx6a_PU8_57-72
CI=0.12


[73-100]:
1hx6a_PU8_73-100
CI=1.97


[101-116]:
1hx6a_PU8_101-116
CI=0.81


[117-132]:
1hx6a_PU8_117-132
CI=0.46


[133-151]:
1hx6a_PU8_133-151
CI=1.76


[152-182]:
1hx6a_PU8_152-182
CI=0.98


[183-214]:
1hx6a_PU8_183-214
CI=2.20


[215-232]:
1hx6a_PU8_215-232
CI=0.00


[233-248]:
1hx6a_PU8_233-248
CI=0.00


[249-362]:
1hx6a_PU8_249-362
CI=4.52


[363-370 ]:
1hx6a_PU8_363-370
CI=0.00


Level 9
PU
Molecule needs Java 1.4 Structure


[1-22]:
1hx6a_PU9_1-22
CI=0.00


[23-56]:
1hx6a_PU9_23-56
CI=0.33


[57-72]:
1hx6a_PU9_57-72
CI=0.12


[73-100]:
1hx6a_PU9_73-100
CI=1.97


[101-116]:
1hx6a_PU9_101-116
CI=0.81


[117-132]:
1hx6a_PU9_117-132
CI=0.46


[133-151]:
1hx6a_PU9_133-151
CI=1.76


[152-182]:
1hx6a_PU9_152-182
CI=0.98


[183-214]:
1hx6a_PU9_183-214
CI=2.20


[215-232]:
1hx6a_PU9_215-232
CI=0.00


[233-248]:
1hx6a_PU9_233-248
CI=0.00


[249-306]:
1hx6a_PU9_249-306
CI=0.96


[307-329]:
1hx6a_PU9_307-329
CI=1.45


[330-362]:
1hx6a_PU9_330-362
CI=0.23


[363-370 ]:
1hx6a_PU9_363-370
CI=0.00


Final level 10

PU
Molecule needs Java 1.4 Structure


[1-22]:
1hx6a_PU_1-22
CI=0.00


[23-56]:
1hx6a_PU_23-56
CI=0.33


[57-72]:
1hx6a_PU_57-72
CI=0.12


[73-100]:
1hx6a_PU_73-100
CI=1.97


[101-116]:
1hx6a_PU_101-116
CI=0.81


[117-132]:
1hx6a_PU_117-132
CI=0.46


[133-151]:
1hx6a_PU_133-151
CI=1.76


[152-182]:
1hx6a_PU_152-182
CI=0.98


[183-214]:
1hx6a_PU_183-214
CI=2.20


[215-232]:
1hx6a_PU_215-232
CI=0.00


[233-248]:
1hx6a_PU_233-248
CI=0.00


[249-275]:
1hx6a_PU_249-275
CI=0.27


[276-306]:
1hx6a_PU_276-306
CI=1.48


[307-329]:
1hx6a_PU_307-329
CI=1.45


[330-362]:
1hx6a_PU_330-362
CI=0.23


[363-370 ]:
1hx6a_PU_363-370
CI=0.00