Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-92]:
1hxia_PU0_1-92
CI=3.15


[93-108 ]:
1hxia_PU0_93-108
CI=0.00


Level 1
PU
Molecule needs Java 1.4 Structure


[1-44]:
1hxia_PU1_1-44
CI=0.99


[45-92]:
1hxia_PU1_45-92
CI=3.13


[93-108 ]:
1hxia_PU1_93-108
CI=0.00


Level 2
PU
Molecule needs Java 1.4 Structure


[1-17]:
1hxia_PU2_1-17
CI=0.00


[18-44]:
1hxia_PU2_18-44
CI=1.11


[45-92]:
1hxia_PU2_45-92
CI=3.13


[93-108 ]:
1hxia_PU2_93-108
CI=0.00


Final level 3

PU
Molecule needs Java 1.4 Structure


[1-17]:
1hxia_PU_1-17
CI=0.00


[18-44]:
1hxia_PU_18-44
CI=1.11


[45-75]:
1hxia_PU_45-75
CI=3.22


[76-92]:
1hxia_PU_76-92
CI=0.00


[93-108 ]:
1hxia_PU_93-108
CI=0.00