Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-19]:
1i1ja_PU0_1-19
CI=0.10


[20-90]:
1i1ja_PU0_20-90
CI=5.16


[91-106 ]:
1i1ja_PU0_91-106
CI=0.00


Level 1
PU
Molecule needs Java 1.4 Structure


[1-19]:
1i1ja_PU1_1-19
CI=0.10


[20-43]:
1i1ja_PU1_20-43
CI=2.26


[44-82]:
1i1ja_PU1_44-82
CI=3.79


[83-90]:
1i1ja_PU1_83-90
CI=0.00


[91-106 ]:
1i1ja_PU1_91-106
CI=0.00


Final level 2

PU
Molecule needs Java 1.4 Structure


[1-19]:
1i1ja_PU_1-19
CI=0.10


[20-43]:
1i1ja_PU_20-43
CI=2.26


[44-64]:
1i1ja_PU_44-64
CI=2.60


[65-82]:
1i1ja_PU_65-82
CI=0.52


[83-90]:
1i1ja_PU_83-90
CI=0.00


[91-106 ]:
1i1ja_PU_91-106
CI=0.00