Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-234]:
1i88a_PU0_1-234
CI=4.23


[235-388 ]:
1i88a_PU0_235-388
CI=3.71


Level 1
PU
Molecule needs Java 1.4 Structure


[1-26]:
1i88a_PU1_1-26
CI=0.00


[27-90]:
1i88a_PU1_27-90
CI=1.75


[91-234]:
1i88a_PU1_91-234
CI=3.76


[235-388 ]:
1i88a_PU1_235-388
CI=3.71


Level 2
PU
Molecule needs Java 1.4 Structure


[1-26]:
1i88a_PU2_1-26
CI=0.00


[27-90]:
1i88a_PU2_27-90
CI=1.75


[91-192]:
1i88a_PU2_91-192
CI=3.28


[193-215]:
1i88a_PU2_193-215
CI=0.65


[216-234]:
1i88a_PU2_216-234
CI=0.19


[235-388 ]:
1i88a_PU2_235-388
CI=3.71


Level 3
PU
Molecule needs Java 1.4 Structure


[1-26]:
1i88a_PU3_1-26
CI=0.00


[27-71]:
1i88a_PU3_27-71
CI=1.58


[72-90]:
1i88a_PU3_72-90
CI=0.97


[91-192]:
1i88a_PU3_91-192
CI=3.28


[193-215]:
1i88a_PU3_193-215
CI=0.65


[216-234]:
1i88a_PU3_216-234
CI=0.19


[235-388 ]:
1i88a_PU3_235-388
CI=3.71


Level 4
PU
Molecule needs Java 1.4 Structure


[1-26]:
1i88a_PU4_1-26
CI=0.00


[27-71]:
1i88a_PU4_27-71
CI=1.58


[72-90]:
1i88a_PU4_72-90
CI=0.97


[91-192]:
1i88a_PU4_91-192
CI=3.28


[193-215]:
1i88a_PU4_193-215
CI=0.65


[216-234]:
1i88a_PU4_216-234
CI=0.19


[235-250]:
1i88a_PU4_235-250
CI=0.00


[251-268]:
1i88a_PU4_251-268
CI=2.29


[269-388 ]:
1i88a_PU4_269-388
CI=3.03


Level 5
PU
Molecule needs Java 1.4 Structure


[1-26]:
1i88a_PU5_1-26
CI=0.00


[27-71]:
1i88a_PU5_27-71
CI=1.58


[72-90]:
1i88a_PU5_72-90
CI=0.97


[91-192]:
1i88a_PU5_91-192
CI=3.28


[193-215]:
1i88a_PU5_193-215
CI=0.65


[216-234]:
1i88a_PU5_216-234
CI=0.19


[235-250]:
1i88a_PU5_235-250
CI=0.00


[251-268]:
1i88a_PU5_251-268
CI=2.29


[269-297]:
1i88a_PU5_269-297
CI=0.19


[298-348]:
1i88a_PU5_298-348
CI=1.75


[349-388 ]:
1i88a_PU5_349-388
CI=3.30


Level 6
PU
Molecule needs Java 1.4 Structure


[1-26]:
1i88a_PU6_1-26
CI=0.00


[27-71]:
1i88a_PU6_27-71
CI=1.58


[72-90]:
1i88a_PU6_72-90
CI=0.97


[91-107]:
1i88a_PU6_91-107
CI=0.00


[108-123]:
1i88a_PU6_108-123
CI=0.11


[124-192]:
1i88a_PU6_124-192
CI=3.44


[193-215]:
1i88a_PU6_193-215
CI=0.65


[216-234]:
1i88a_PU6_216-234
CI=0.19


[235-250]:
1i88a_PU6_235-250
CI=0.00


[251-268]:
1i88a_PU6_251-268
CI=2.29


[269-297]:
1i88a_PU6_269-297
CI=0.19


[298-348]:
1i88a_PU6_298-348
CI=1.75


[349-388 ]:
1i88a_PU6_349-388
CI=3.30


Level 7
PU
Molecule needs Java 1.4 Structure


[1-26]:
1i88a_PU7_1-26
CI=0.00


[27-71]:
1i88a_PU7_27-71
CI=1.58


[72-90]:
1i88a_PU7_72-90
CI=0.97


[91-107]:
1i88a_PU7_91-107
CI=0.00


[108-123]:
1i88a_PU7_108-123
CI=0.11


[124-192]:
1i88a_PU7_124-192
CI=3.44


[193-215]:
1i88a_PU7_193-215
CI=0.65


[216-234]:
1i88a_PU7_216-234
CI=0.19


[235-250]:
1i88a_PU7_235-250
CI=0.00


[251-268]:
1i88a_PU7_251-268
CI=2.29


[269-297]:
1i88a_PU7_269-297
CI=0.19


[298-348]:
1i88a_PU7_298-348
CI=1.75


[349-365]:
1i88a_PU7_349-365
CI=1.62


[366-388 ]:
1i88a_PU7_366-388
CI=2.22


Level 8
PU
Molecule needs Java 1.4 Structure


[1-26]:
1i88a_PU8_1-26
CI=0.00


[27-71]:
1i88a_PU8_27-71
CI=1.58


[72-90]:
1i88a_PU8_72-90
CI=0.97


[91-107]:
1i88a_PU8_91-107
CI=0.00


[108-123]:
1i88a_PU8_108-123
CI=0.11


[124-192]:
1i88a_PU8_124-192
CI=3.44


[193-215]:
1i88a_PU8_193-215
CI=0.65


[216-234]:
1i88a_PU8_216-234
CI=0.19


[235-250]:
1i88a_PU8_235-250
CI=0.00


[251-268]:
1i88a_PU8_251-268
CI=2.29


[269-297]:
1i88a_PU8_269-297
CI=0.19


[298-323]:
1i88a_PU8_298-323
CI=0.71


[324-348]:
1i88a_PU8_324-348
CI=0.96


[349-365]:
1i88a_PU8_349-365
CI=1.62


[366-388 ]:
1i88a_PU8_366-388
CI=2.22


Final level 9

PU
Molecule needs Java 1.4 Structure


[1-26]:
1i88a_PU_1-26
CI=0.00


[27-71]:
1i88a_PU_27-71
CI=1.58


[72-90]:
1i88a_PU_72-90
CI=0.97


[91-107]:
1i88a_PU_91-107
CI=0.00


[108-123]:
1i88a_PU_108-123
CI=0.11


[124-163]:
1i88a_PU_124-163
CI=2.82


[164-192]:
1i88a_PU_164-192
CI=0.83


[193-215]:
1i88a_PU_193-215
CI=0.65


[216-234]:
1i88a_PU_216-234
CI=0.19


[235-250]:
1i88a_PU_235-250
CI=0.00


[251-268]:
1i88a_PU_251-268
CI=2.29


[269-297]:
1i88a_PU_269-297
CI=0.19


[298-323]:
1i88a_PU_298-323
CI=0.71


[324-348]:
1i88a_PU_324-348
CI=0.96


[349-365]:
1i88a_PU_349-365
CI=1.62


[366-388 ]:
1i88a_PU_366-388
CI=2.22