Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-40]:
1io7a_PU0_1-40
CI=1.28


[41-212]:
1io7a_PU0_41-212
CI=2.04


[213-366 ]:
1io7a_PU0_213-366
CI=3.28


Level 1
PU
Molecule needs Java 1.4 Structure


[1-40]:
1io7a_PU1_1-40
CI=1.28


[41-212]:
1io7a_PU1_41-212
CI=2.04


[213-255]:
1io7a_PU1_213-255
CI=1.18


[256-280]:
1io7a_PU1_256-280
CI=3.12


[281-366 ]:
1io7a_PU1_281-366
CI=1.74


Level 2
PU
Molecule needs Java 1.4 Structure


[1-40]:
1io7a_PU2_1-40
CI=1.28


[41-212]:
1io7a_PU2_41-212
CI=2.04


[213-255]:
1io7a_PU2_213-255
CI=1.18


[256-280]:
1io7a_PU2_256-280
CI=3.12


[281-324]:
1io7a_PU2_281-324
CI=1.29


[325-366 ]:
1io7a_PU2_325-366
CI=2.17


Level 3
PU
Molecule needs Java 1.4 Structure


[1-40]:
1io7a_PU3_1-40
CI=1.28


[41-86]:
1io7a_PU3_41-86
CI=1.41


[87-125]:
1io7a_PU3_87-125
CI=0.72


[126-212]:
1io7a_PU3_126-212
CI=1.75


[213-255]:
1io7a_PU3_213-255
CI=1.18


[256-280]:
1io7a_PU3_256-280
CI=3.12


[281-324]:
1io7a_PU3_281-324
CI=1.29


[325-366 ]:
1io7a_PU3_325-366
CI=2.17


Level 4
PU
Molecule needs Java 1.4 Structure


[1-40]:
1io7a_PU4_1-40
CI=1.28


[41-86]:
1io7a_PU4_41-86
CI=1.41


[87-125]:
1io7a_PU4_87-125
CI=0.72


[126-212]:
1io7a_PU4_126-212
CI=1.75


[213-255]:
1io7a_PU4_213-255
CI=1.18


[256-280]:
1io7a_PU4_256-280
CI=3.12


[281-308]:
1io7a_PU4_281-308
CI=1.27


[309-324]:
1io7a_PU4_309-324
CI=0.79


[325-366 ]:
1io7a_PU4_325-366
CI=2.17


Level 5
PU
Molecule needs Java 1.4 Structure


[1-40]:
1io7a_PU5_1-40
CI=1.28


[41-86]:
1io7a_PU5_41-86
CI=1.41


[87-103]:
1io7a_PU5_87-103
CI=0.00


[104-125]:
1io7a_PU5_104-125
CI=0.92


[126-212]:
1io7a_PU5_126-212
CI=1.75


[213-255]:
1io7a_PU5_213-255
CI=1.18


[256-280]:
1io7a_PU5_256-280
CI=3.12


[281-308]:
1io7a_PU5_281-308
CI=1.27


[309-324]:
1io7a_PU5_309-324
CI=0.79


[325-366 ]:
1io7a_PU5_325-366
CI=2.17


Level 6
PU
Molecule needs Java 1.4 Structure


[1-24]:
1io7a_PU6_1-24
CI=1.18


[25-40]:
1io7a_PU6_25-40
CI=0.46


[41-86]:
1io7a_PU6_41-86
CI=1.41


[87-103]:
1io7a_PU6_87-103
CI=0.00


[104-125]:
1io7a_PU6_104-125
CI=0.92


[126-212]:
1io7a_PU6_126-212
CI=1.75


[213-255]:
1io7a_PU6_213-255
CI=1.18


[256-280]:
1io7a_PU6_256-280
CI=3.12


[281-308]:
1io7a_PU6_281-308
CI=1.27


[309-324]:
1io7a_PU6_309-324
CI=0.79


[325-366 ]:
1io7a_PU6_325-366
CI=2.17


Final level 7

PU
Molecule needs Java 1.4 Structure


[1-24]:
1io7a_PU_1-24
CI=1.18


[25-40]:
1io7a_PU_25-40
CI=0.46


[41-86]:
1io7a_PU_41-86
CI=1.41


[87-103]:
1io7a_PU_87-103
CI=0.00


[104-125]:
1io7a_PU_104-125
CI=0.92


[126-154]:
1io7a_PU_126-154
CI=0.70


[155-170]:
1io7a_PU_155-170
CI=0.00


[171-212]:
1io7a_PU_171-212
CI=0.98


[213-255]:
1io7a_PU_213-255
CI=1.18


[256-280]:
1io7a_PU_256-280
CI=3.12


[281-308]:
1io7a_PU_281-308
CI=1.27


[309-324]:
1io7a_PU_309-324
CI=0.79


[325-366 ]:
1io7a_PU_325-366
CI=2.17