Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-75]:
1iq5b_PU0_1-75
CI=1.59


[76-144 ]:
1iq5b_PU0_76-144
CI=1.70


Level 1
PU
Molecule needs Java 1.4 Structure


[1-75]:
1iq5b_PU1_1-75
CI=1.59


[76-98]:
1iq5b_PU1_76-98
CI=0.57


[99-121]:
1iq5b_PU1_99-121
CI=0.81


[122-144 ]:
1iq5b_PU1_122-144
CI=1.22


Level 2
PU
Molecule needs Java 1.4 Structure


[1-46]:
1iq5b_PU2_1-46
CI=0.96


[47-75]:
1iq5b_PU2_47-75
CI=1.11


[76-98]:
1iq5b_PU2_76-98
CI=0.57


[99-121]:
1iq5b_PU2_99-121
CI=0.81


[122-144 ]:
1iq5b_PU2_122-144
CI=1.22


Final level 3

PU
Molecule needs Java 1.4 Structure


[1-24]:
1iq5b_PU_1-24
CI=0.40


[25-46]:
1iq5b_PU_25-46
CI=0.76


[47-75]:
1iq5b_PU_47-75
CI=1.11


[76-98]:
1iq5b_PU_76-98
CI=0.57


[99-121]:
1iq5b_PU_99-121
CI=0.81


[122-144 ]:
1iq5b_PU_122-144
CI=1.22