Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-152]:
1iqca_PU0_1-152
CI=3.88


[153-284]:
1iqca_PU0_153-284
CI=3.14


[285-308 ]:
1iqca_PU0_285-308
CI=0.08


Level 1
PU
Molecule needs Java 1.4 Structure


[1-152]:
1iqca_PU1_1-152
CI=3.88


[153-210]:
1iqca_PU1_153-210
CI=0.85


[211-228]:
1iqca_PU1_211-228
CI=2.16


[229-284]:
1iqca_PU1_229-284
CI=2.12


[285-308 ]:
1iqca_PU1_285-308
CI=0.08


Level 2
PU
Molecule needs Java 1.4 Structure


[1-152]:
1iqca_PU2_1-152
CI=3.88


[153-174]:
1iqca_PU2_153-174
CI=0.77


[175-210]:
1iqca_PU2_175-210
CI=0.88


[211-228]:
1iqca_PU2_211-228
CI=2.16


[229-284]:
1iqca_PU2_229-284
CI=2.12


[285-308 ]:
1iqca_PU2_285-308
CI=0.08


Level 3
PU
Molecule needs Java 1.4 Structure


[1-152]:
1iqca_PU3_1-152
CI=3.88


[153-174]:
1iqca_PU3_153-174
CI=0.77


[175-194]:
1iqca_PU3_175-194
CI=0.91


[195-210]:
1iqca_PU3_195-210
CI=0.12


[211-228]:
1iqca_PU3_211-228
CI=2.16


[229-284]:
1iqca_PU3_229-284
CI=2.12


[285-308 ]:
1iqca_PU3_285-308
CI=0.08


Level 4
PU
Molecule needs Java 1.4 Structure


[1-25]:
1iqca_PU4_1-25
CI=0.08


[26-105]:
1iqca_PU4_26-105
CI=3.62


[106-152]:
1iqca_PU4_106-152
CI=1.02


[153-174]:
1iqca_PU4_153-174
CI=0.77


[175-194]:
1iqca_PU4_175-194
CI=0.91


[195-210]:
1iqca_PU4_195-210
CI=0.12


[211-228]:
1iqca_PU4_211-228
CI=2.16


[229-284]:
1iqca_PU4_229-284
CI=2.12


[285-308 ]:
1iqca_PU4_285-308
CI=0.08


Level 5
PU
Molecule needs Java 1.4 Structure


[1-25]:
1iqca_PU5_1-25
CI=0.08


[26-105]:
1iqca_PU5_26-105
CI=3.62


[106-134]:
1iqca_PU5_106-134
CI=1.38


[135-152]:
1iqca_PU5_135-152
CI=0.00


[153-174]:
1iqca_PU5_153-174
CI=0.77


[175-194]:
1iqca_PU5_175-194
CI=0.91


[195-210]:
1iqca_PU5_195-210
CI=0.12


[211-228]:
1iqca_PU5_211-228
CI=2.16


[229-284]:
1iqca_PU5_229-284
CI=2.12


[285-308 ]:
1iqca_PU5_285-308
CI=0.08


Level 6
PU
Molecule needs Java 1.4 Structure


[1-25]:
1iqca_PU6_1-25
CI=0.08


[26-64]:
1iqca_PU6_26-64
CI=2.54


[65-95]:
1iqca_PU6_65-95
CI=1.32


[96-105]:
1iqca_PU6_96-105
CI=1.62


[106-134]:
1iqca_PU6_106-134
CI=1.38


[135-152]:
1iqca_PU6_135-152
CI=0.00


[153-174]:
1iqca_PU6_153-174
CI=0.77


[175-194]:
1iqca_PU6_175-194
CI=0.91


[195-210]:
1iqca_PU6_195-210
CI=0.12


[211-228]:
1iqca_PU6_211-228
CI=2.16


[229-284]:
1iqca_PU6_229-284
CI=2.12


[285-308 ]:
1iqca_PU6_285-308
CI=0.08


Level 7
PU
Molecule needs Java 1.4 Structure


[1-25]:
1iqca_PU7_1-25
CI=0.08


[26-64]:
1iqca_PU7_26-64
CI=2.54


[65-95]:
1iqca_PU7_65-95
CI=1.32


[96-105]:
1iqca_PU7_96-105
CI=1.62


[106-134]:
1iqca_PU7_106-134
CI=1.38


[135-152]:
1iqca_PU7_135-152
CI=0.00


[153-174]:
1iqca_PU7_153-174
CI=0.77


[175-194]:
1iqca_PU7_175-194
CI=0.91


[195-210]:
1iqca_PU7_195-210
CI=0.12


[211-228]:
1iqca_PU7_211-228
CI=2.16


[229-250]:
1iqca_PU7_229-250
CI=1.11


[251-284]:
1iqca_PU7_251-284
CI=1.11


[285-308 ]:
1iqca_PU7_285-308
CI=0.08


Level 8
PU
Molecule needs Java 1.4 Structure


[1-25]:
1iqca_PU8_1-25
CI=0.08


[26-64]:
1iqca_PU8_26-64
CI=2.54


[65-95]:
1iqca_PU8_65-95
CI=1.32


[96-105]:
1iqca_PU8_96-105
CI=1.62


[106-134]:
1iqca_PU8_106-134
CI=1.38


[135-152]:
1iqca_PU8_135-152
CI=0.00


[153-174]:
1iqca_PU8_153-174
CI=0.77


[175-194]:
1iqca_PU8_175-194
CI=0.91


[195-210]:
1iqca_PU8_195-210
CI=0.12


[211-228]:
1iqca_PU8_211-228
CI=2.16


[229-250]:
1iqca_PU8_229-250
CI=1.11


[251-267]:
1iqca_PU8_251-267
CI=0.77


[268-284]:
1iqca_PU8_268-284
CI=0.00


[285-308 ]:
1iqca_PU8_285-308
CI=0.08


Final level 9

PU
Molecule needs Java 1.4 Structure


[1-25]:
1iqca_PU_1-25
CI=0.08


[26-42]:
1iqca_PU_26-42
CI=2.28


[43-64]:
1iqca_PU_43-64
CI=1.20


[65-95]:
1iqca_PU_65-95
CI=1.32


[96-105]:
1iqca_PU_96-105
CI=1.62


[106-134]:
1iqca_PU_106-134
CI=1.38


[135-152]:
1iqca_PU_135-152
CI=0.00


[153-174]:
1iqca_PU_153-174
CI=0.77


[175-194]:
1iqca_PU_175-194
CI=0.91


[195-210]:
1iqca_PU_195-210
CI=0.12


[211-228]:
1iqca_PU_211-228
CI=2.16


[229-250]:
1iqca_PU_229-250
CI=1.11


[251-267]:
1iqca_PU_251-267
CI=0.77


[268-284]:
1iqca_PU_268-284
CI=0.00


[285-308 ]:
1iqca_PU_285-308
CI=0.08