Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-26]:
1is3a_PU0_1-26
CI=0.07


[27-77]:
1is3a_PU0_27-77
CI=4.80


[78-134 ]:
1is3a_PU0_78-134
CI=2.10


Level 1
PU
Molecule needs Java 1.4 Structure


[1-26]:
1is3a_PU1_1-26
CI=0.07


[27-77]:
1is3a_PU1_27-77
CI=4.80


[78-114]:
1is3a_PU1_78-114
CI=3.01


[115-134 ]:
1is3a_PU1_115-134
CI=0.09


Level 2
PU
Molecule needs Java 1.4 Structure


[1-26]:
1is3a_PU2_1-26
CI=0.07


[27-46]:
1is3a_PU2_27-46
CI=2.64


[47-77]:
1is3a_PU2_47-77
CI=2.76


[78-114]:
1is3a_PU2_78-114
CI=3.01


[115-134 ]:
1is3a_PU2_115-134
CI=0.09


Final level 3

PU
Molecule needs Java 1.4 Structure


[1-26]:
1is3a_PU_1-26
CI=0.07


[27-46]:
1is3a_PU_27-46
CI=2.64


[47-77]:
1is3a_PU_47-77
CI=2.76


[78-98]:
1is3a_PU_78-98
CI=1.08


[99-114]:
1is3a_PU_99-114
CI=0.34


[115-134 ]:
1is3a_PU_115-134
CI=0.09