Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-24]:
1it2a_PU0_1-24
CI=0.00


[25-77]:
1it2a_PU0_25-77
CI=1.46


[78-146 ]:
1it2a_PU0_78-146
CI=1.52


Level 1
PU
Molecule needs Java 1.4 Structure


[1-24]:
1it2a_PU1_1-24
CI=0.00


[25-77]:
1it2a_PU1_25-77
CI=1.46


[78-95]:
1it2a_PU1_78-95
CI=0.30


[96-146 ]:
1it2a_PU1_96-146
CI=1.76


Level 2
PU
Molecule needs Java 1.4 Structure


[1-24]:
1it2a_PU2_1-24
CI=0.00


[25-50]:
1it2a_PU2_25-50
CI=0.42


[51-77]:
1it2a_PU2_51-77
CI=0.75


[78-95]:
1it2a_PU2_78-95
CI=0.30


[96-146 ]:
1it2a_PU2_96-146
CI=1.76


Level 3
PU
Molecule needs Java 1.4 Structure


[1-24]:
1it2a_PU3_1-24
CI=0.00


[25-50]:
1it2a_PU3_25-50
CI=0.42


[51-77]:
1it2a_PU3_51-77
CI=0.75


[78-95]:
1it2a_PU3_78-95
CI=0.30


[96-112]:
1it2a_PU3_96-112
CI=0.43


[113-146 ]:
1it2a_PU3_113-146
CI=0.66


Final level 4

PU
Molecule needs Java 1.4 Structure


[1-24]:
1it2a_PU_1-24
CI=0.00


[25-50]:
1it2a_PU_25-50
CI=0.42


[51-77]:
1it2a_PU_51-77
CI=0.75


[78-95]:
1it2a_PU_78-95
CI=0.30


[96-112]:
1it2a_PU_96-112
CI=0.43


[113-129]:
1it2a_PU_113-129
CI=0.11


[130-146 ]:
1it2a_PU_130-146
CI=0.00