Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-77]:
1iuka_PU0_1-77
CI=3.76


[78-124]:
1iuka_PU0_78-124
CI=2.27


[125-136 ]:
1iuka_PU0_125-136
CI=0.00


Level 1
PU
Molecule needs Java 1.4 Structure


[1-77]:
1iuka_PU1_1-77
CI=3.76


[78-95]:
1iuka_PU1_78-95
CI=0.00


[96-124]:
1iuka_PU1_96-124
CI=2.61


[125-136 ]:
1iuka_PU1_125-136
CI=0.00


Level 2
PU
Molecule needs Java 1.4 Structure


[1-21]:
1iuka_PU2_1-21
CI=0.00


[22-40]:
1iuka_PU2_22-40
CI=0.69


[41-77]:
1iuka_PU2_41-77
CI=2.41


[78-95]:
1iuka_PU2_78-95
CI=0.00


[96-124]:
1iuka_PU2_96-124
CI=2.61


[125-136 ]:
1iuka_PU2_125-136
CI=0.00


Final level 3

PU
Molecule needs Java 1.4 Structure


[1-21]:
1iuka_PU_1-21
CI=0.00


[22-40]:
1iuka_PU_22-40
CI=0.69


[41-61]:
1iuka_PU_41-61
CI=2.83


[62-77]:
1iuka_PU_62-77
CI=0.11


[78-95]:
1iuka_PU_78-95
CI=0.00


[96-124]:
1iuka_PU_96-124
CI=2.61


[125-136 ]:
1iuka_PU_125-136
CI=0.00