Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-279]:
1izca_PU0_1-279
CI=4.18


[280-299 ]:
1izca_PU0_280-299
CI=0.00


Level 1
PU
Molecule needs Java 1.4 Structure


[1-122]:
1izca_PU1_1-122
CI=4.21


[123-247]:
1izca_PU1_123-247
CI=2.48


[248-279]:
1izca_PU1_248-279
CI=2.03


[280-299 ]:
1izca_PU1_280-299
CI=0.00


Level 2
PU
Molecule needs Java 1.4 Structure


[1-122]:
1izca_PU2_1-122
CI=4.21


[123-147]:
1izca_PU2_123-147
CI=1.43


[148-176]:
1izca_PU2_148-176
CI=1.41


[177-247]:
1izca_PU2_177-247
CI=1.88


[248-279]:
1izca_PU2_248-279
CI=2.03


[280-299 ]:
1izca_PU2_280-299
CI=0.00


Level 3
PU
Molecule needs Java 1.4 Structure


[1-122]:
1izca_PU3_1-122
CI=4.21


[123-147]:
1izca_PU3_123-147
CI=1.43


[148-176]:
1izca_PU3_148-176
CI=1.41


[177-206]:
1izca_PU3_177-206
CI=1.78


[207-232]:
1izca_PU3_207-232
CI=0.49


[233-247]:
1izca_PU3_233-247
CI=0.00


[248-279]:
1izca_PU3_248-279
CI=2.03


[280-299 ]:
1izca_PU3_280-299
CI=0.00


Level 4
PU
Molecule needs Java 1.4 Structure


[1-40]:
1izca_PU4_1-40
CI=0.95


[41-122]:
1izca_PU4_41-122
CI=4.46


[123-147]:
1izca_PU4_123-147
CI=1.43


[148-176]:
1izca_PU4_148-176
CI=1.41


[177-206]:
1izca_PU4_177-206
CI=1.78


[207-232]:
1izca_PU4_207-232
CI=0.49


[233-247]:
1izca_PU4_233-247
CI=0.00


[248-279]:
1izca_PU4_248-279
CI=2.03


[280-299 ]:
1izca_PU4_280-299
CI=0.00


Level 5
PU
Molecule needs Java 1.4 Structure


[1-24]:
1izca_PU5_1-24
CI=0.39


[25-40]:
1izca_PU5_25-40
CI=0.45


[41-122]:
1izca_PU5_41-122
CI=4.46


[123-147]:
1izca_PU5_123-147
CI=1.43


[148-176]:
1izca_PU5_148-176
CI=1.41


[177-206]:
1izca_PU5_177-206
CI=1.78


[207-232]:
1izca_PU5_207-232
CI=0.49


[233-247]:
1izca_PU5_233-247
CI=0.00


[248-279]:
1izca_PU5_248-279
CI=2.03


[280-299 ]:
1izca_PU5_280-299
CI=0.00


Level 6
PU
Molecule needs Java 1.4 Structure


[1-24]:
1izca_PU6_1-24
CI=0.39


[25-40]:
1izca_PU6_25-40
CI=0.45


[41-99]:
1izca_PU6_41-99
CI=4.20


[100-122]:
1izca_PU6_100-122
CI=0.82


[123-147]:
1izca_PU6_123-147
CI=1.43


[148-176]:
1izca_PU6_148-176
CI=1.41


[177-206]:
1izca_PU6_177-206
CI=1.78


[207-232]:
1izca_PU6_207-232
CI=0.49


[233-247]:
1izca_PU6_233-247
CI=0.00


[248-279]:
1izca_PU6_248-279
CI=2.03


[280-299 ]:
1izca_PU6_280-299
CI=0.00


Level 7
PU
Molecule needs Java 1.4 Structure


[1-24]:
1izca_PU7_1-24
CI=0.39


[25-40]:
1izca_PU7_25-40
CI=0.45


[41-75]:
1izca_PU7_41-75
CI=2.61


[76-99]:
1izca_PU7_76-99
CI=0.78


[100-122]:
1izca_PU7_100-122
CI=0.82


[123-147]:
1izca_PU7_123-147
CI=1.43


[148-176]:
1izca_PU7_148-176
CI=1.41


[177-206]:
1izca_PU7_177-206
CI=1.78


[207-232]:
1izca_PU7_207-232
CI=0.49


[233-247]:
1izca_PU7_233-247
CI=0.00


[248-279]:
1izca_PU7_248-279
CI=2.03


[280-299 ]:
1izca_PU7_280-299
CI=0.00


Final level 8

PU
Molecule needs Java 1.4 Structure


[1-24]:
1izca_PU_1-24
CI=0.39


[25-40]:
1izca_PU_25-40
CI=0.45


[41-59]:
1izca_PU_41-59
CI=0.28


[60-75]:
1izca_PU_60-75
CI=0.11


[76-99]:
1izca_PU_76-99
CI=0.78


[100-122]:
1izca_PU_100-122
CI=0.82


[123-147]:
1izca_PU_123-147
CI=1.43


[148-176]:
1izca_PU_148-176
CI=1.41


[177-206]:
1izca_PU_177-206
CI=1.78


[207-232]:
1izca_PU_207-232
CI=0.49


[233-247]:
1izca_PU_233-247
CI=0.00


[248-279]:
1izca_PU_248-279
CI=2.03


[280-299 ]:
1izca_PU_280-299
CI=0.00