Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-25]:
1j1ya_PU0_1-25
CI=1.74


[26-41]:
1j1ya_PU0_26-41
CI=1.04


[42-116 ]:
1j1ya_PU0_42-116
CI=4.72


Level 1
PU
Molecule needs Java 1.4 Structure


[1-25]:
1j1ya_PU1_1-25
CI=1.74


[26-41]:
1j1ya_PU1_26-41
CI=1.04


[42-67]:
1j1ya_PU1_42-67
CI=0.49


[68-108]:
1j1ya_PU1_68-108
CI=3.19


[109-116 ]:
1j1ya_PU1_109-116
CI=0.00


Final level 2

PU
Molecule needs Java 1.4 Structure


[1-25]:
1j1ya_PU_1-25
CI=1.74


[26-41]:
1j1ya_PU_26-41
CI=1.04


[42-67]:
1j1ya_PU_42-67
CI=0.49


[68-84]:
1j1ya_PU_68-84
CI=0.00


[85-108]:
1j1ya_PU_85-108
CI=1.81


[109-116 ]:
1j1ya_PU_109-116
CI=0.00