Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-27]:
1j5xa_PU0_1-27
CI=0.06


[28-128]:
1j5xa_PU0_28-128
CI=4.78


[129-312 ]:
1j5xa_PU0_129-312
CI=3.32


Level 1
PU
Molecule needs Java 1.4 Structure


[1-27]:
1j5xa_PU1_1-27
CI=0.06


[28-128]:
1j5xa_PU1_28-128
CI=4.78


[129-144]:
1j5xa_PU1_129-144
CI=0.44


[145-166]:
1j5xa_PU1_145-166
CI=0.42


[167-312 ]:
1j5xa_PU1_167-312
CI=3.48


Level 2
PU
Molecule needs Java 1.4 Structure


[1-27]:
1j5xa_PU2_1-27
CI=0.06


[28-128]:
1j5xa_PU2_28-128
CI=4.78


[129-144]:
1j5xa_PU2_129-144
CI=0.44


[145-166]:
1j5xa_PU2_145-166
CI=0.42


[167-296]:
1j5xa_PU2_167-296
CI=3.70


[297-312 ]:
1j5xa_PU2_297-312
CI=0.00


Level 3
PU
Molecule needs Java 1.4 Structure


[1-27]:
1j5xa_PU3_1-27
CI=0.06


[28-64]:
1j5xa_PU3_28-64
CI=2.68


[65-128]:
1j5xa_PU3_65-128
CI=4.44


[129-144]:
1j5xa_PU3_129-144
CI=0.44


[145-166]:
1j5xa_PU3_145-166
CI=0.42


[167-296]:
1j5xa_PU3_167-296
CI=3.70


[297-312 ]:
1j5xa_PU3_297-312
CI=0.00


Level 4
PU
Molecule needs Java 1.4 Structure


[1-27]:
1j5xa_PU4_1-27
CI=0.06


[28-64]:
1j5xa_PU4_28-64
CI=2.68


[65-128]:
1j5xa_PU4_65-128
CI=4.44


[129-144]:
1j5xa_PU4_129-144
CI=0.44


[145-166]:
1j5xa_PU4_145-166
CI=0.42


[167-218]:
1j5xa_PU4_167-218
CI=2.06


[219-274]:
1j5xa_PU4_219-274
CI=2.51


[275-296]:
1j5xa_PU4_275-296
CI=0.00


[297-312 ]:
1j5xa_PU4_297-312
CI=0.00


Level 5
PU
Molecule needs Java 1.4 Structure


[1-27]:
1j5xa_PU5_1-27
CI=0.06


[28-64]:
1j5xa_PU5_28-64
CI=2.68


[65-128]:
1j5xa_PU5_65-128
CI=4.44


[129-144]:
1j5xa_PU5_129-144
CI=0.44


[145-166]:
1j5xa_PU5_145-166
CI=0.42


[167-186]:
1j5xa_PU5_167-186
CI=0.00


[187-218]:
1j5xa_PU5_187-218
CI=3.31


[219-274]:
1j5xa_PU5_219-274
CI=2.51


[275-296]:
1j5xa_PU5_275-296
CI=0.00


[297-312 ]:
1j5xa_PU5_297-312
CI=0.00


Level 6
PU
Molecule needs Java 1.4 Structure


[1-27]:
1j5xa_PU6_1-27
CI=0.06


[28-64]:
1j5xa_PU6_28-64
CI=2.68


[65-128]:
1j5xa_PU6_65-128
CI=4.44


[129-144]:
1j5xa_PU6_129-144
CI=0.44


[145-166]:
1j5xa_PU6_145-166
CI=0.42


[167-186]:
1j5xa_PU6_167-186
CI=0.00


[187-218]:
1j5xa_PU6_187-218
CI=3.31


[219-235]:
1j5xa_PU6_219-235
CI=0.00


[236-274]:
1j5xa_PU6_236-274
CI=2.54


[275-296]:
1j5xa_PU6_275-296
CI=0.00


[297-312 ]:
1j5xa_PU6_297-312
CI=0.00


Level 7
PU
Molecule needs Java 1.4 Structure


[1-27]:
1j5xa_PU7_1-27
CI=0.06


[28-64]:
1j5xa_PU7_28-64
CI=2.68


[65-105]:
1j5xa_PU7_65-105
CI=1.79


[106-128]:
1j5xa_PU7_106-128
CI=3.91


[129-144]:
1j5xa_PU7_129-144
CI=0.44


[145-166]:
1j5xa_PU7_145-166
CI=0.42


[167-186]:
1j5xa_PU7_167-186
CI=0.00


[187-218]:
1j5xa_PU7_187-218
CI=3.31


[219-235]:
1j5xa_PU7_219-235
CI=0.00


[236-274]:
1j5xa_PU7_236-274
CI=2.54


[275-296]:
1j5xa_PU7_275-296
CI=0.00


[297-312 ]:
1j5xa_PU7_297-312
CI=0.00


Level 8
PU
Molecule needs Java 1.4 Structure


[1-27]:
1j5xa_PU8_1-27
CI=0.06


[28-64]:
1j5xa_PU8_28-64
CI=2.68


[65-105]:
1j5xa_PU8_65-105
CI=1.79


[106-128]:
1j5xa_PU8_106-128
CI=3.91


[129-144]:
1j5xa_PU8_129-144
CI=0.44


[145-166]:
1j5xa_PU8_145-166
CI=0.42


[167-186]:
1j5xa_PU8_167-186
CI=0.00


[187-218]:
1j5xa_PU8_187-218
CI=3.31


[219-235]:
1j5xa_PU8_219-235
CI=0.00


[236-258]:
1j5xa_PU8_236-258
CI=0.40


[259-274]:
1j5xa_PU8_259-274
CI=1.85


[275-296]:
1j5xa_PU8_275-296
CI=0.00


[297-312 ]:
1j5xa_PU8_297-312
CI=0.00


Level 9
PU
Molecule needs Java 1.4 Structure


[1-27]:
1j5xa_PU9_1-27
CI=0.06


[28-64]:
1j5xa_PU9_28-64
CI=2.68


[65-85]:
1j5xa_PU9_65-85
CI=0.09


[86-105]:
1j5xa_PU9_86-105
CI=0.09


[106-128]:
1j5xa_PU9_106-128
CI=3.91


[129-144]:
1j5xa_PU9_129-144
CI=0.44


[145-166]:
1j5xa_PU9_145-166
CI=0.42


[167-186]:
1j5xa_PU9_167-186
CI=0.00


[187-218]:
1j5xa_PU9_187-218
CI=3.31


[219-235]:
1j5xa_PU9_219-235
CI=0.00


[236-258]:
1j5xa_PU9_236-258
CI=0.40


[259-274]:
1j5xa_PU9_259-274
CI=1.85


[275-296]:
1j5xa_PU9_275-296
CI=0.00


[297-312 ]:
1j5xa_PU9_297-312
CI=0.00


Final level 10

PU
Molecule needs Java 1.4 Structure


[1-27]:
1j5xa_PU_1-27
CI=0.06


[28-46]:
1j5xa_PU_28-46
CI=0.59


[47-64]:
1j5xa_PU_47-64
CI=0.82


[65-85]:
1j5xa_PU_65-85
CI=0.09


[86-105]:
1j5xa_PU_86-105
CI=0.09


[106-128]:
1j5xa_PU_106-128
CI=3.91


[129-144]:
1j5xa_PU_129-144
CI=0.44


[145-166]:
1j5xa_PU_145-166
CI=0.42


[167-186]:
1j5xa_PU_167-186
CI=0.00


[187-218]:
1j5xa_PU_187-218
CI=3.31


[219-235]:
1j5xa_PU_219-235
CI=0.00


[236-258]:
1j5xa_PU_236-258
CI=0.40


[259-274]:
1j5xa_PU_259-274
CI=1.85


[275-296]:
1j5xa_PU_275-296
CI=0.00


[297-312 ]:
1j5xa_PU_297-312
CI=0.00